Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29483 | 5' | -50.7 | NC_006151.1 | + | 38154 | 0.66 | 0.996355 |
Target: 5'- gCCGCggacuCUGUCgcccUCGUCGcCCgCACCg -3' miRNA: 3'- -GGCGau---GGUAGa---AGUAGCuGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 86237 | 0.66 | 0.996355 |
Target: 5'- gCGCUGCgaCAUCggCGcCGugCUgGCCg -3' miRNA: 3'- gGCGAUG--GUAGaaGUaGCugGAgUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 137227 | 0.66 | 0.996355 |
Target: 5'- gCCGUgACCAacaucguccUCgaCGUCGACUuUCGCCu -3' miRNA: 3'- -GGCGaUGGU---------AGaaGUAGCUGG-AGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 50836 | 0.66 | 0.996355 |
Target: 5'- cCCGCgccGCCGUCcccUCggCGGCCgcccucccgCGCCc -3' miRNA: 3'- -GGCGa--UGGUAGa--AGuaGCUGGa--------GUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 57457 | 0.66 | 0.996355 |
Target: 5'- cCCGCgucgGCCAggugccgCgccgCggCGGCCUCGCa -3' miRNA: 3'- -GGCGa---UGGUa------Gaa--GuaGCUGGAGUGg -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 130906 | 0.66 | 0.994221 |
Target: 5'- gCCGUcGCCGUCgUCggUGGCCggGCCc -3' miRNA: 3'- -GGCGaUGGUAGaAGuaGCUGGagUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 59425 | 0.66 | 0.994221 |
Target: 5'- -aGCggcGCCAgcUCggCGUCGGCCgcCGCCg -3' miRNA: 3'- ggCGa--UGGU--AGaaGUAGCUGGa-GUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 48306 | 0.67 | 0.992308 |
Target: 5'- gCGCUGCCAcccCUaCAUCGcguaCUCGCUg -3' miRNA: 3'- gGCGAUGGUa--GAaGUAGCug--GAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 92149 | 0.67 | 0.992308 |
Target: 5'- gCGCcaagGCCAUCauggCcgCGGCCgugcgCGCCg -3' miRNA: 3'- gGCGa---UGGUAGaa--GuaGCUGGa----GUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 112746 | 0.67 | 0.992308 |
Target: 5'- gCGCcacgGCCGUCUUCGU-GGCC--GCCu -3' miRNA: 3'- gGCGa---UGGUAGAAGUAgCUGGagUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 138922 | 0.67 | 0.992308 |
Target: 5'- cUCGCcGCCAcggUCAUCGGCUgcagcuaCACCa -3' miRNA: 3'- -GGCGaUGGUagaAGUAGCUGGa------GUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 66588 | 0.67 | 0.992308 |
Target: 5'- gCGCgcgGCCGagg-CGcUCGACUUCGCCg -3' miRNA: 3'- gGCGa--UGGUagaaGU-AGCUGGAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 4681 | 0.66 | 0.99332 |
Target: 5'- uCUGCaGCCAgga-CAU-GGCCUCGCCg -3' miRNA: 3'- -GGCGaUGGUagaaGUAgCUGGAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 118371 | 0.66 | 0.99332 |
Target: 5'- gCGCgcGCCcgCUUCGgguucUCGGCCU-ACCg -3' miRNA: 3'- gGCGa-UGGuaGAAGU-----AGCUGGAgUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 138082 | 0.66 | 0.99332 |
Target: 5'- aCCGCgagGCCuUCUUCGccCGGCgCaCGCCg -3' miRNA: 3'- -GGCGa--UGGuAGAAGUa-GCUG-GaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 60312 | 0.66 | 0.99332 |
Target: 5'- uCCGg-GCCGUgCgcCAUCGGCUUCACg -3' miRNA: 3'- -GGCgaUGGUA-GaaGUAGCUGGAGUGg -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 115761 | 0.66 | 0.99332 |
Target: 5'- cCUGCUGCUGUCcagCAgcaCGGCCUCcUCg -3' miRNA: 3'- -GGCGAUGGUAGaa-GUa--GCUGGAGuGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 107819 | 0.66 | 0.99332 |
Target: 5'- cCCGCcGCCGg--UCAUCaACC-CGCCc -3' miRNA: 3'- -GGCGaUGGUagaAGUAGcUGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 98507 | 0.66 | 0.994136 |
Target: 5'- cCCGCUGCUggagcuccuggggGUCgUCAacggCGACgaCACCa -3' miRNA: 3'- -GGCGAUGG-------------UAGaAGUa---GCUGgaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 13182 | 0.66 | 0.994221 |
Target: 5'- gCCGCgGCCGUC-UCGg-GGCCcgcggCGCCg -3' miRNA: 3'- -GGCGaUGGUAGaAGUagCUGGa----GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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