miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 66588 0.67 0.992308
Target:  5'- gCGCgcgGCCGagg-CGcUCGACUUCGCCg -3'
miRNA:   3'- gGCGa--UGGUagaaGU-AGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 68796 0.71 0.93096
Target:  5'- gCCGCgGCCGUCaUCAggcccgagUCGACCaucucccgCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGU--------AGCUGGa-------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 70377 0.71 0.919922
Target:  5'- gCUGCaagAUCAUCUUCGUCu-CCUcCACCa -3'
miRNA:   3'- -GGCGa--UGGUAGAAGUAGcuGGA-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 70817 0.67 0.992308
Target:  5'- -aGCUACCGgcgcagCUggAUCGugCUCgGCCu -3'
miRNA:   3'- ggCGAUGGUa-----GAagUAGCugGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 75640 0.66 0.996355
Target:  5'- -gGCuUGCCGUCgUCGggGGCCggcUCGCCg -3'
miRNA:   3'- ggCG-AUGGUAGaAGUagCUGG---AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 77673 0.71 0.93096
Target:  5'- cUCGCUGCCGg---CGUCGGCgcuCUCGCUg -3'
miRNA:   3'- -GGCGAUGGUagaaGUAGCUG---GAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 78855 0.68 0.985305
Target:  5'- cCCGCgccaaCAUCUcCAUCGuCCUCAa- -3'
miRNA:   3'- -GGCGaug--GUAGAaGUAGCuGGAGUgg -5'
29483 5' -50.7 NC_006151.1 + 83890 0.68 0.976831
Target:  5'- uCCGCUGCCAcaaccgCUUCuaCGaacGCCUgCGCCg -3'
miRNA:   3'- -GGCGAUGGUa-----GAAGuaGC---UGGA-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 84324 0.74 0.807073
Target:  5'- gCCGCgACCGUg--CG-CGGCCUCGCCg -3'
miRNA:   3'- -GGCGaUGGUAgaaGUaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 85463 0.66 0.995022
Target:  5'- gCCGCgGCCAgaaccUCUUCcUCGGCgaggacgCGCCg -3'
miRNA:   3'- -GGCGaUGGU-----AGAAGuAGCUGga-----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 86207 0.8 0.522865
Target:  5'- cCCGCUGcCCAUCaaCAUCGACCacCGCCc -3'
miRNA:   3'- -GGCGAU-GGUAGaaGUAGCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 86237 0.66 0.996355
Target:  5'- gCGCUGCgaCAUCggCGcCGugCUgGCCg -3'
miRNA:   3'- gGCGAUG--GUAGaaGUaGCugGAgUGG- -5'
29483 5' -50.7 NC_006151.1 + 86278 0.67 0.989924
Target:  5'- aCCGCgGCCccuUCUUCcUCGGCgUCGUCa -3'
miRNA:   3'- -GGCGaUGGu--AGAAGuAGCUGgAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 86976 0.67 0.988532
Target:  5'- aCCGCcGCCAcCgcCGcUCGcCCUCGCCc -3'
miRNA:   3'- -GGCGaUGGUaGaaGU-AGCuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 87079 0.69 0.961773
Target:  5'- gCCGCccCCcgCgag--CGACCUCGCCg -3'
miRNA:   3'- -GGCGauGGuaGaaguaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 91393 0.7 0.958096
Target:  5'- gCCGCUGCCGUCgaCGUugcccaggaacaCGGCCUgggGCCc -3'
miRNA:   3'- -GGCGAUGGUAGaaGUA------------GCUGGAg--UGG- -5'
29483 5' -50.7 NC_006151.1 + 92113 0.68 0.981428
Target:  5'- aCCGCgg-CAUCUUCGggaaCGGCCgCAUCg -3'
miRNA:   3'- -GGCGaugGUAGAAGUa---GCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 92149 0.67 0.992308
Target:  5'- gCGCcaagGCCAUCauggCcgCGGCCgugcgCGCCg -3'
miRNA:   3'- gGCGa---UGGUAGaa--GuaGCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 93278 0.71 0.925566
Target:  5'- cCCGCcggccCCAUCUcccuUCGGCCgUCACCa -3'
miRNA:   3'- -GGCGau---GGUAGAagu-AGCUGG-AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 98173 0.68 0.985305
Target:  5'- cCCGUUGCCgAUCUgcacgcUCAUCG-UCgCGCCg -3'
miRNA:   3'- -GGCGAUGG-UAGA------AGUAGCuGGaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.