miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 45505 0.68 0.981428
Target:  5'- gCCGCUuucagccCCAggagcCGUCGACC-CACCg -3'
miRNA:   3'- -GGCGAu------GGUagaa-GUAGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 46894 1.04 0.020089
Target:  5'- uCCGCUACCAUC-UCAUCGACCUCACCc -3'
miRNA:   3'- -GGCGAUGGUAGaAGUAGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 48306 0.67 0.992308
Target:  5'- gCGCUGCCAcccCUaCAUCGcguaCUCGCUg -3'
miRNA:   3'- gGCGAUGGUa--GAaGUAGCug--GAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 50836 0.66 0.996355
Target:  5'- cCCGCgccGCCGUCcccUCggCGGCCgcccucccgCGCCc -3'
miRNA:   3'- -GGCGa--UGGUAGa--AGuaGCUGGa--------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 51623 0.66 0.995731
Target:  5'- aCCGC-GCCGUCgcgCAgcgCGGCCaauauaugcUCGCUg -3'
miRNA:   3'- -GGCGaUGGUAGaa-GUa--GCUGG---------AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 56111 0.7 0.955777
Target:  5'- gCCGCUGCCucgccggggaggcCUUCcgCGGgUUCGCCu -3'
miRNA:   3'- -GGCGAUGGua-----------GAAGuaGCUgGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 57215 0.67 0.99106
Target:  5'- cCCGCUcgacgagGCCGUCgcaggCGgcgcgcgCGGCCUCGgCg -3'
miRNA:   3'- -GGCGA-------UGGUAGaa---GUa------GCUGGAGUgG- -5'
29483 5' -50.7 NC_006151.1 + 57457 0.66 0.996355
Target:  5'- cCCGCgucgGCCAggugccgCgccgCggCGGCCUCGCa -3'
miRNA:   3'- -GGCGa---UGGUa------Gaa--GuaGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 58506 0.67 0.989924
Target:  5'- cCCGCgcgcggGCCGgccUCguccUCGUCcuCCUCGCCg -3'
miRNA:   3'- -GGCGa-----UGGU---AGa---AGUAGcuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 59425 0.66 0.994221
Target:  5'- -aGCggcGCCAgcUCggCGUCGGCCgcCGCCg -3'
miRNA:   3'- ggCGa--UGGU--AGaaGUAGCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 59820 0.67 0.986995
Target:  5'- gCCGCUGuCCG-CgaUGUCGGCCgcCACCg -3'
miRNA:   3'- -GGCGAU-GGUaGaaGUAGCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 60312 0.66 0.99332
Target:  5'- uCCGg-GCCGUgCgcCAUCGGCUUCACg -3'
miRNA:   3'- -GGCgaUGGUA-GaaGUAGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 60624 0.68 0.984948
Target:  5'- gCCGCcGCCGUCgUCGgggcggggcuccCGGCCcgCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGUa-----------GCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 60680 0.66 0.994221
Target:  5'- gCCGCcGCCGUCcUCccgCGcGCC-CGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGua-GC-UGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 61413 0.71 0.914026
Target:  5'- aCGCcccGCCGUCcUCcUCGGCCcCGCCg -3'
miRNA:   3'- gGCGa--UGGUAGaAGuAGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 61703 0.74 0.816049
Target:  5'- aCCGUgACCAgCUUCuUCGGCUUCACg -3'
miRNA:   3'- -GGCGaUGGUaGAAGuAGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 63777 0.7 0.950031
Target:  5'- cCCGCgucGCCAggCgggGUCGGCCgUCGCCa -3'
miRNA:   3'- -GGCGa--UGGUa-GaagUAGCUGG-AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 65523 0.69 0.974242
Target:  5'- uCCGCgGCCAgcagCgUCAUgaCGGCCUCgugGCCg -3'
miRNA:   3'- -GGCGaUGGUa---GaAGUA--GCUGGAG---UGG- -5'
29483 5' -50.7 NC_006151.1 + 65864 0.68 0.985305
Target:  5'- uCCGCUccuccagcaGCCAUUgggUCAgcagGGCCUCGuCCg -3'
miRNA:   3'- -GGCGA---------UGGUAGa--AGUag--CUGGAGU-GG- -5'
29483 5' -50.7 NC_006151.1 + 65960 0.7 0.950031
Target:  5'- gCGCgGCCGcg-UCGUCGAgccgguCCUCGCCg -3'
miRNA:   3'- gGCGaUGGUagaAGUAGCU------GGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.