miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 117985 0.68 0.985127
Target:  5'- cCCGCUcCCGUCUcgucUCGccgcgucUCG-UCUCACCc -3'
miRNA:   3'- -GGCGAuGGUAGA----AGU-------AGCuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 117312 0.68 0.981428
Target:  5'- gCGCUcGCCAcgccgagggCggCGUCGGCCUCgGCCu -3'
miRNA:   3'- gGCGA-UGGUa--------GaaGUAGCUGGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 116088 0.68 0.985305
Target:  5'- gCCGCcGCCGUCguccUCGUCGGCgauggCGCg -3'
miRNA:   3'- -GGCGaUGGUAGa---AGUAGCUGga---GUGg -5'
29483 5' -50.7 NC_006151.1 + 115761 0.66 0.99332
Target:  5'- cCUGCUGCUGUCcagCAgcaCGGCCUCcUCg -3'
miRNA:   3'- -GGCGAUGGUAGaa-GUa--GCUGGAGuGG- -5'
29483 5' -50.7 NC_006151.1 + 115229 0.69 0.961773
Target:  5'- gCCGCUGCCGcCgaga-CGGCCUCgucGCCa -3'
miRNA:   3'- -GGCGAUGGUaGaaguaGCUGGAG---UGG- -5'
29483 5' -50.7 NC_006151.1 + 114037 0.68 0.976831
Target:  5'- aCGCUGCCcu-----UCGACCUCgGCCa -3'
miRNA:   3'- gGCGAUGGuagaaguAGCUGGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 113131 0.73 0.858124
Target:  5'- gCCGCcggGCCcggCUaCGcCGACCUCGCCa -3'
miRNA:   3'- -GGCGa--UGGua-GAaGUaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 112746 0.67 0.992308
Target:  5'- gCGCcacgGCCGUCUUCGU-GGCC--GCCu -3'
miRNA:   3'- gGCGa---UGGUAGAAGUAgCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 109396 0.68 0.979224
Target:  5'- aCCGCcggccccACCAcCUUCG-CGGCCggccgCACCa -3'
miRNA:   3'- -GGCGa------UGGUaGAAGUaGCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 109193 0.67 0.988532
Target:  5'- gUCGUcgUGCC-UCUgc--CGGCCUCGCCa -3'
miRNA:   3'- -GGCG--AUGGuAGAaguaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 107819 0.66 0.99332
Target:  5'- cCCGCcGCCGg--UCAUCaACC-CGCCc -3'
miRNA:   3'- -GGCGaUGGUagaAGUAGcUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 107490 0.73 0.858124
Target:  5'- gCCGCUGCCcccGUCgccgCcgGUCGACC-CGCCc -3'
miRNA:   3'- -GGCGAUGG---UAGaa--G--UAGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 107229 0.69 0.973972
Target:  5'- cCCGCUGuucaccuCCAUCaUCAUgGGCgaCGCCc -3'
miRNA:   3'- -GGCGAU-------GGUAGaAGUAgCUGgaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 104981 0.69 0.961773
Target:  5'- gCCGCcgGCCucgCUcaaCAUCGACCggGCCg -3'
miRNA:   3'- -GGCGa-UGGua-GAa--GUAGCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 104809 0.68 0.985305
Target:  5'- gCCGCgACCuggCggCGgcgcgcgaCGGCCUCGCCg -3'
miRNA:   3'- -GGCGaUGGua-GaaGUa-------GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 102005 0.67 0.989924
Target:  5'- cCCGCgcACCcgCgagccCAUgGGCUUCGCCg -3'
miRNA:   3'- -GGCGa-UGGuaGaa---GUAgCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 101785 0.67 0.989924
Target:  5'- cCCGggGCCAUCc----CGuCCUCGCCg -3'
miRNA:   3'- -GGCgaUGGUAGaaguaGCuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 101392 0.67 0.988532
Target:  5'- gCGCgcGCCuUCUUCGaCGGCCUCugggcgcagcgcGCCg -3'
miRNA:   3'- gGCGa-UGGuAGAAGUaGCUGGAG------------UGG- -5'
29483 5' -50.7 NC_006151.1 + 99732 0.73 0.865923
Target:  5'- gCGCgGCg--C-UCGUCGACCUCGCCg -3'
miRNA:   3'- gGCGaUGguaGaAGUAGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 98810 0.67 0.991179
Target:  5'- gCGCUGCCG-CUggCGUUGGCggugCGCCa -3'
miRNA:   3'- gGCGAUGGUaGAa-GUAGCUGga--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.