miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 138922 0.67 0.992308
Target:  5'- cUCGCcGCCAcggUCAUCGGCUgcagcuaCACCa -3'
miRNA:   3'- -GGCGaUGGUagaAGUAGCUGGa------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 138082 0.66 0.99332
Target:  5'- aCCGCgagGCCuUCUUCGccCGGCgCaCGCCg -3'
miRNA:   3'- -GGCGa--UGGuAGAAGUa-GCUG-GaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 137227 0.66 0.996355
Target:  5'- gCCGUgACCAacaucguccUCgaCGUCGACUuUCGCCu -3'
miRNA:   3'- -GGCGaUGGU---------AGaaGUAGCUGG-AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 136090 0.67 0.989656
Target:  5'- cCCGCUGcgcuCCAUCgcggUCGggcgccgcgggcUGACCUCGCUc -3'
miRNA:   3'- -GGCGAU----GGUAGa---AGUa-----------GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 135483 0.68 0.981428
Target:  5'- uCCGCgcggGCCAggCggCGcgCGGCCUCgGCCg -3'
miRNA:   3'- -GGCGa---UGGUa-GaaGUa-GCUGGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 135354 0.66 0.995022
Target:  5'- uCCGCgaGCCGcCgcgCGUUGGCCgcgugCGCCg -3'
miRNA:   3'- -GGCGa-UGGUaGaa-GUAGCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 133235 0.69 0.961773
Target:  5'- gCCGC-GCCAgggcaCGUUGGCCUCGCa -3'
miRNA:   3'- -GGCGaUGGUagaa-GUAGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 132898 0.71 0.936101
Target:  5'- aCGCgACCAcgcacUCcUCGUCGcgcauCCUCACCg -3'
miRNA:   3'- gGCGaUGGU-----AGaAGUAGCu----GGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 131804 0.72 0.894848
Target:  5'- gCGC-GCCAUCcUCcUCGGCCUCGgCu -3'
miRNA:   3'- gGCGaUGGUAGaAGuAGCUGGAGUgG- -5'
29483 5' -50.7 NC_006151.1 + 131142 0.67 0.991179
Target:  5'- gCCGCgGCCGUCauagcCGUCGuCgUCAUCg -3'
miRNA:   3'- -GGCGaUGGUAGaa---GUAGCuGgAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 130906 0.66 0.994221
Target:  5'- gCCGUcGCCGUCgUCggUGGCCggGCCc -3'
miRNA:   3'- -GGCGaUGGUAGaAGuaGCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 127628 0.71 0.919922
Target:  5'- aCC-CccUCGUCUUCGUCGuccuCCUCGCCg -3'
miRNA:   3'- -GGcGauGGUAGAAGUAGCu---GGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 125681 0.66 0.995022
Target:  5'- -aGCUcCuCAUCUcgCG-CGACCUCAUCg -3'
miRNA:   3'- ggCGAuG-GUAGAa-GUaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 123912 0.68 0.976581
Target:  5'- gCGCggcgGCCGUgacgCGggccgccUCGGCCUCGCCg -3'
miRNA:   3'- gGCGa---UGGUAgaa-GU-------AGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 123877 0.67 0.991179
Target:  5'- gCUGCUGCUGgcgCUcgCcgCGGCCcCGCCg -3'
miRNA:   3'- -GGCGAUGGUa--GAa-GuaGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 122777 0.67 0.991179
Target:  5'- -gGCUGCUcgUgggCGgcugcgCGGCCUCGCCc -3'
miRNA:   3'- ggCGAUGGuaGaa-GUa-----GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 120675 0.7 0.948738
Target:  5'- gCGCUACUGcgaccacaagcaguUCUUCAUCaacaGCCUCACg -3'
miRNA:   3'- gGCGAUGGU--------------AGAAGUAGc---UGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 118694 0.68 0.981428
Target:  5'- cCCGCgccCCuUCUUCAaCGGCC-CGCUc -3'
miRNA:   3'- -GGCGau-GGuAGAAGUaGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 118371 0.66 0.99332
Target:  5'- gCGCgcGCCcgCUUCGgguucUCGGCCU-ACCg -3'
miRNA:   3'- gGCGa-UGGuaGAAGU-----AGCUGGAgUGG- -5'
29483 5' -50.7 NC_006151.1 + 118166 0.7 0.940515
Target:  5'- gCCGCUggugcgcggccugACCGUCgaggcCGGCUUCGCCg -3'
miRNA:   3'- -GGCGA-------------UGGUAGaaguaGCUGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.