miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 784 0.74 0.824849
Target:  5'- aCGCggucGCCGUCgUCAUCGuCC-CGCCg -3'
miRNA:   3'- gGCGa---UGGUAGaAGUAGCuGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 4681 0.66 0.99332
Target:  5'- uCUGCaGCCAgga-CAU-GGCCUCGCCg -3'
miRNA:   3'- -GGCGaUGGUagaaGUAgCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 6272 0.66 0.995731
Target:  5'- aCGCgaUGCCcUCUUCcUCGGCCgcggcggcggcCGCCa -3'
miRNA:   3'- gGCG--AUGGuAGAAGuAGCUGGa----------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 6858 0.71 0.93096
Target:  5'- cCCGCggcgGCCAUCUUgcccCAUCGACg--GCCa -3'
miRNA:   3'- -GGCGa---UGGUAGAA----GUAGCUGgagUGG- -5'
29483 5' -50.7 NC_006151.1 + 7023 0.67 0.992308
Target:  5'- cCCGCggcgGCCAUC-UCGgcUCGcCCggGCCa -3'
miRNA:   3'- -GGCGa---UGGUAGaAGU--AGCuGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 7103 0.69 0.971448
Target:  5'- cCCGCUcugcgGCCAUCUuggCcgCGGCg-CGCCa -3'
miRNA:   3'- -GGCGA-----UGGUAGAa--GuaGCUGgaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 12736 0.71 0.936101
Target:  5'- cCCGCUcauCCGUCUUCAUCG-CCgCGg- -3'
miRNA:   3'- -GGCGAu--GGUAGAAGUAGCuGGaGUgg -5'
29483 5' -50.7 NC_006151.1 + 13182 0.66 0.994221
Target:  5'- gCCGCgGCCGUC-UCGg-GGCCcgcggCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGUagCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 21128 0.7 0.958096
Target:  5'- gCGCcACCAUCaUCAUCGAC---GCCg -3'
miRNA:   3'- gGCGaUGGUAGaAGUAGCUGgagUGG- -5'
29483 5' -50.7 NC_006151.1 + 24982 0.69 0.961773
Target:  5'- gCCGCgucagccccCCGUCaUCGUCGuCCUCGuCCc -3'
miRNA:   3'- -GGCGau-------GGUAGaAGUAGCuGGAGU-GG- -5'
29483 5' -50.7 NC_006151.1 + 25016 0.66 0.995731
Target:  5'- cCCGCUGCUGUCgcCGUCG-CCgUCGa- -3'
miRNA:   3'- -GGCGAUGGUAGaaGUAGCuGG-AGUgg -5'
29483 5' -50.7 NC_006151.1 + 26422 0.73 0.833464
Target:  5'- uCCGUcuUCGUCUUCGUCuuCUUCACCg -3'
miRNA:   3'- -GGCGauGGUAGAAGUAGcuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 28047 0.69 0.96522
Target:  5'- cCCGCgAUCGUCgUCGUCGAggccgaugccgaCgUCACCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGUAGCU------------GgAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 35851 0.67 0.991179
Target:  5'- uCCGCcGCCcgCUcuccgcgcUCGgcgccCGGCCUCGCUc -3'
miRNA:   3'- -GGCGaUGGuaGA--------AGUa----GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 37158 0.68 0.983452
Target:  5'- gCCGCcACCGUCUcCGcCGGCgCcCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGAaGUaGCUG-GaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 37469 0.68 0.979224
Target:  5'- cCCGCUACCGcg--CcgCGGCCggGCCc -3'
miRNA:   3'- -GGCGAUGGUagaaGuaGCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 37790 0.66 0.995528
Target:  5'- gCCGCUACgAUCgcacccagaagaccUUCAUCcugcagaGCCUcCGCCg -3'
miRNA:   3'- -GGCGAUGgUAG--------------AAGUAGc------UGGA-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 38154 0.66 0.996355
Target:  5'- gCCGCggacuCUGUCgcccUCGUCGcCCgCACCg -3'
miRNA:   3'- -GGCGau---GGUAGa---AGUAGCuGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 39283 0.7 0.945182
Target:  5'- gCUGCUGCUcUCggCGcgggaccUCGGCUUCGCCg -3'
miRNA:   3'- -GGCGAUGGuAGaaGU-------AGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 39820 0.85 0.28579
Target:  5'- cCCGCUGcggcCCGUCUUCGUCuccugcggccgccggGGCCUCGCCg -3'
miRNA:   3'- -GGCGAU----GGUAGAAGUAG---------------CUGGAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.