Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29483 | 5' | -50.7 | NC_006151.1 | + | 48306 | 0.67 | 0.992308 |
Target: 5'- gCGCUGCCAcccCUaCAUCGcguaCUCGCUg -3' miRNA: 3'- gGCGAUGGUa--GAaGUAGCug--GAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 7023 | 0.67 | 0.992308 |
Target: 5'- cCCGCggcgGCCAUC-UCGgcUCGcCCggGCCa -3' miRNA: 3'- -GGCGa---UGGUAGaAGU--AGCuGGagUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 70817 | 0.67 | 0.992308 |
Target: 5'- -aGCUACCGgcgcagCUggAUCGugCUCgGCCu -3' miRNA: 3'- ggCGAUGGUa-----GAagUAGCugGAG-UGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 131142 | 0.67 | 0.991179 |
Target: 5'- gCCGCgGCCGUCauagcCGUCGuCgUCAUCg -3' miRNA: 3'- -GGCGaUGGUAGaa---GUAGCuGgAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 35851 | 0.67 | 0.991179 |
Target: 5'- uCCGCcGCCcgCUcuccgcgcUCGgcgccCGGCCUCGCUc -3' miRNA: 3'- -GGCGaUGGuaGA--------AGUa----GCUGGAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 123877 | 0.67 | 0.991179 |
Target: 5'- gCUGCUGCUGgcgCUcgCcgCGGCCcCGCCg -3' miRNA: 3'- -GGCGAUGGUa--GAa-GuaGCUGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 118694 | 0.68 | 0.981428 |
Target: 5'- cCCGCgccCCuUCUUCAaCGGCC-CGCUc -3' miRNA: 3'- -GGCGau-GGuAGAAGUaGCUGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 135483 | 0.68 | 0.981428 |
Target: 5'- uCCGCgcggGCCAggCggCGcgCGGCCUCgGCCg -3' miRNA: 3'- -GGCGa---UGGUa-GaaGUa-GCUGGAG-UGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 117312 | 0.68 | 0.981428 |
Target: 5'- gCGCUcGCCAcgccgagggCggCGUCGGCCUCgGCCu -3' miRNA: 3'- gGCGA-UGGUa--------GaaGUAGCUGGAG-UGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 92113 | 0.68 | 0.981428 |
Target: 5'- aCCGCgg-CAUCUUCGggaaCGGCCgCAUCg -3' miRNA: 3'- -GGCGaugGUAGAAGUa---GCUGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 45505 | 0.68 | 0.981428 |
Target: 5'- gCCGCUuucagccCCAggagcCGUCGACC-CACCg -3' miRNA: 3'- -GGCGAu------GGUagaa-GUAGCUGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 109396 | 0.68 | 0.979224 |
Target: 5'- aCCGCcggccccACCAcCUUCG-CGGCCggccgCACCa -3' miRNA: 3'- -GGCGa------UGGUaGAAGUaGCUGGa----GUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 37158 | 0.68 | 0.983452 |
Target: 5'- gCCGCcACCGUCUcCGcCGGCgCcCGCCg -3' miRNA: 3'- -GGCGaUGGUAGAaGUaGCUG-GaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 60624 | 0.68 | 0.984948 |
Target: 5'- gCCGCcGCCGUCgUCGgggcggggcuccCGGCCcgCGCCg -3' miRNA: 3'- -GGCGaUGGUAGaAGUa-----------GCUGGa-GUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 117985 | 0.68 | 0.985127 |
Target: 5'- cCCGCUcCCGUCUcgucUCGccgcgucUCG-UCUCACCc -3' miRNA: 3'- -GGCGAuGGUAGA----AGU-------AGCuGGAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 65864 | 0.68 | 0.985305 |
Target: 5'- uCCGCUccuccagcaGCCAUUgggUCAgcagGGCCUCGuCCg -3' miRNA: 3'- -GGCGA---------UGGUAGa--AGUag--CUGGAGU-GG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 78855 | 0.68 | 0.985305 |
Target: 5'- cCCGCgccaaCAUCUcCAUCGuCCUCAa- -3' miRNA: 3'- -GGCGaug--GUAGAaGUAGCuGGAGUgg -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 98173 | 0.68 | 0.985305 |
Target: 5'- cCCGUUGCCgAUCUgcacgcUCAUCG-UCgCGCCg -3' miRNA: 3'- -GGCGAUGG-UAGA------AGUAGCuGGaGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 104809 | 0.68 | 0.985305 |
Target: 5'- gCCGCgACCuggCggCGgcgcgcgaCGGCCUCGCCg -3' miRNA: 3'- -GGCGaUGGua-GaaGUa-------GCUGGAGUGG- -5' |
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29483 | 5' | -50.7 | NC_006151.1 | + | 37469 | 0.68 | 0.979224 |
Target: 5'- cCCGCUACCGcg--CcgCGGCCggGCCc -3' miRNA: 3'- -GGCGAUGGUagaaGuaGCUGGagUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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