Results 41 - 60 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 83445 | 0.7 | 0.437553 |
Target: 5'- gGGCaGCGUGGCCGccAGGCCcacgaagGCcgccgcgcugaugUCCCCg -3' miRNA: 3'- -UCG-CGCACUGGC--UCCGGua-----CG-------------AGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 56633 | 0.7 | 0.447245 |
Target: 5'- uGCGCacgcccgagaUGGCCGAGGCCGUGUaCCgCu -3' miRNA: 3'- uCGCGc---------ACUGGCUCCGGUACGaGGgG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 133162 | 0.7 | 0.447245 |
Target: 5'- cGGCGCGggcgugGGCCucGGCCAcGCgUCCCa -3' miRNA: 3'- -UCGCGCa-----CUGGcuCCGGUaCG-AGGGg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 130254 | 0.7 | 0.447245 |
Target: 5'- aGGCGCG-GAa-GAGGCCGgcgcGCggCCCCg -3' miRNA: 3'- -UCGCGCaCUggCUCCGGUa---CGa-GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 137773 | 0.7 | 0.447245 |
Target: 5'- cGCGCGUGcuCCaGcAGGCCGUGCUgCUg -3' miRNA: 3'- uCGCGCACu-GG-C-UCCGGUACGAgGGg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 105689 | 0.7 | 0.456158 |
Target: 5'- cGGCGCGgGGCCGAcgccggcgcGGCCGcGCgCCUCg -3' miRNA: 3'- -UCGCGCaCUGGCU---------CCGGUaCGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 97911 | 0.7 | 0.474266 |
Target: 5'- aGGCGCGgaUGccgucgccGCCGAGGCCGcGCccgCCCUc -3' miRNA: 3'- -UCGCGC--AC--------UGGCUCCGGUaCGa--GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 83321 | 0.7 | 0.474266 |
Target: 5'- uGCGCaG-GGCCGugagcAGGCgcgcguccaCGUGCUCCCCg -3' miRNA: 3'- uCGCG-CaCUGGC-----UCCG---------GUACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 28833 | 0.7 | 0.474266 |
Target: 5'- uGCGgGccccgggGACgCG-GGCCcgGCUCCCCc -3' miRNA: 3'- uCGCgCa------CUG-GCuCCGGuaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 8824 | 0.7 | 0.474266 |
Target: 5'- cGCGUGUGugCGcGcGCCu--CUCCCCg -3' miRNA: 3'- uCGCGCACugGCuC-CGGuacGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 20155 | 0.7 | 0.474266 |
Target: 5'- cGGCGCGUgGACCGccGGGCC--GCgCCCg -3' miRNA: 3'- -UCGCGCA-CUGGC--UCCGGuaCGaGGGg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 125645 | 0.7 | 0.47793 |
Target: 5'- cGgGCGUGAUCGAgGGCCAgcUcggcgacgacaacgaGCUCCUCa -3' miRNA: 3'- uCgCGCACUGGCU-CCGGU--A---------------CGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 74539 | 0.7 | 0.483453 |
Target: 5'- cAGCGCGUGGuugagcuccucCUGGGGCUgguUGCccagcgggUCCCCg -3' miRNA: 3'- -UCGCGCACU-----------GGCUCCGGu--ACG--------AGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 105801 | 0.69 | 0.492726 |
Target: 5'- aGGCGCGgagcGACgCGGacGCgGUGUUCCCCa -3' miRNA: 3'- -UCGCGCa---CUG-GCUc-CGgUACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 124987 | 0.69 | 0.492726 |
Target: 5'- cAGCGCGUGcACCuGGGCgAcUGCgUCCuCCg -3' miRNA: 3'- -UCGCGCAC-UGGcUCCGgU-ACG-AGG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 22790 | 0.69 | 0.50208 |
Target: 5'- cGCGCacGUG-CUG-GGCCGU-CUCCCCg -3' miRNA: 3'- uCGCG--CACuGGCuCCGGUAcGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 2604 | 0.69 | 0.50208 |
Target: 5'- cGCGCGgcggcagcggGACCGGGGUCcgGggCCCg -3' miRNA: 3'- uCGCGCa---------CUGGCUCCGGuaCgaGGGg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 13026 | 0.69 | 0.50208 |
Target: 5'- cGGgGCGcGGCCGAcccGGCgGUGacccaUCCCCa -3' miRNA: 3'- -UCgCGCaCUGGCU---CCGgUACg----AGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 69644 | 0.69 | 0.50208 |
Target: 5'- cGCGCGUGcggcGCCGccGGGUCGUcgaaGC-CCCCg -3' miRNA: 3'- uCGCGCAC----UGGC--UCCGGUA----CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 39791 | 0.69 | 0.51151 |
Target: 5'- cGCGCGgccaACCGcuggGGGCUcgGCgCCCCg -3' miRNA: 3'- uCGCGCac--UGGC----UCCGGuaCGaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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