Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29485 | 3' | -53.8 | NC_006151.1 | + | 46196 | 1.14 | 0.002916 |
Target: 5'- aGGUCUCGACGGUCAUCGAGAGCGACCc -3' miRNA: 3'- -CCAGAGCUGCCAGUAGCUCUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 20493 | 0.77 | 0.51392 |
Target: 5'- gGGUCgUCGGCGGcUCuggcucgAUCGGGGGCGGCg -3' miRNA: 3'- -CCAG-AGCUGCC-AG-------UAGCUCUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 44376 | 0.75 | 0.604729 |
Target: 5'- gGGUUgCGACGGUCccgccgCGGGGGCG-CCg -3' miRNA: 3'- -CCAGaGCUGCCAGua----GCUCUCGCuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 24485 | 0.75 | 0.593564 |
Target: 5'- uGGUCUCGAUGGUCccggCGAGcccguaaaaguugGGCGccGCCa -3' miRNA: 3'- -CCAGAGCUGCCAGua--GCUC-------------UCGC--UGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 76258 | 0.75 | 0.625084 |
Target: 5'- gGGcCUCGACGGcgAUCGAGAagGCGGCg -3' miRNA: 3'- -CCaGAGCUGCCagUAGCUCU--CGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 6167 | 0.74 | 0.635274 |
Target: 5'- cGGcCUCGGCGGcgUCGUCG-GAGaagaGGCCg -3' miRNA: 3'- -CCaGAGCUGCC--AGUAGCuCUCg---CUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 34700 | 0.73 | 0.735657 |
Target: 5'- gGGUCUCGG-GGUC-UCGcGAGUGGCa -3' miRNA: 3'- -CCAGAGCUgCCAGuAGCuCUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 19852 | 0.72 | 0.780302 |
Target: 5'- cGUCUCGGCGGagaggcucggggccUCgGUgGAGAGCG-CCa -3' miRNA: 3'- cCAGAGCUGCC--------------AG-UAgCUCUCGCuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 128392 | 0.72 | 0.773814 |
Target: 5'- aGGUCcaCGGCGGcCA-CGAcGGCGGCCg -3' miRNA: 3'- -CCAGa-GCUGCCaGUaGCUcUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 5447 | 0.72 | 0.783063 |
Target: 5'- cGGg--CGACGGUC-UCGAcGGCGACg -3' miRNA: 3'- -CCagaGCUGCCAGuAGCUcUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 70951 | 0.72 | 0.764441 |
Target: 5'- -uUCUCGGCGGUgcgcguggcCGUCGAGGGCaACa -3' miRNA: 3'- ccAGAGCUGCCA---------GUAGCUCUCGcUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 21428 | 0.71 | 0.827118 |
Target: 5'- gGGcCUCGGgGGUCGcggCGuGGGGUGGCCc -3' miRNA: 3'- -CCaGAGCUgCCAGUa--GC-UCUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 128055 | 0.71 | 0.792177 |
Target: 5'- cGGcagCGGCGGcugCG-CGGGGGCGACCg -3' miRNA: 3'- -CCagaGCUGCCa--GUaGCUCUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 6332 | 0.71 | 0.818626 |
Target: 5'- cGGUCUCGAUGaaGUCAaaGAGAucGuCGGCCa -3' miRNA: 3'- -CCAGAGCUGC--CAGUagCUCU--C-GCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 142238 | 0.71 | 0.827118 |
Target: 5'- gGGUCgcgacgaggCGuCGGUCAUCGcggcgaGGAGCGcCCc -3' miRNA: 3'- -CCAGa--------GCuGCCAGUAGC------UCUCGCuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 4372 | 0.71 | 0.835433 |
Target: 5'- gGGcCUCGACGGUCGccuccccggcgCGGGGguccgcggcGCGGCCc -3' miRNA: 3'- -CCaGAGCUGCCAGUa----------GCUCU---------CGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 90736 | 0.71 | 0.809967 |
Target: 5'- cGGUggCGGCGG-CGcccUCGGGGGCGGCg -3' miRNA: 3'- -CCAgaGCUGCCaGU---AGCUCUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 127359 | 0.71 | 0.818626 |
Target: 5'- cGGUCUCGcccuggGCGGggaCcgCGGGGGUGGCg -3' miRNA: 3'- -CCAGAGC------UGCCa--GuaGCUCUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 135252 | 0.7 | 0.843566 |
Target: 5'- -cUCUCGGCGGUCAUgCGcAGGGCcuGCUc -3' miRNA: 3'- ccAGAGCUGCCAGUA-GC-UCUCGc-UGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 133435 | 0.7 | 0.843566 |
Target: 5'- gGGUCUUGGCGGccgaggcgcUCuuggccccgGUCGAGgcccgcgaGGCGGCCg -3' miRNA: 3'- -CCAGAGCUGCC---------AG---------UAGCUC--------UCGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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