Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 6146 | 0.66 | 0.970365 |
|
Target: 5'- -cGGCCGcgAGgacGGcggccucggccucgGCGGCGUCGUCGGa -3' miRNA: 3'- cuCCGGCa-UCa--CC--------------UGUUGUAGCAGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 88178 | 0.66 | 0.968239 |
|
Target: 5'- cGAGGUgGUagacGGUGucGGCGGCGUgGUCGGa -3' miRNA: 3'- -CUCCGgCA----UCAC--CUGUUGUAgCAGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 64382 | 0.66 | 0.965016 |
|
Target: 5'- cGAGGCCGUGGccagcccgcGGcGCAGCAgCGUCc- -3' miRNA: 3'- -CUCCGGCAUCa--------CC-UGUUGUaGCAGcu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 76821 | 0.66 | 0.965016 |
|
Target: 5'- cGGGCgCGUAGUGG-CGGCccgCGUCc- -3' miRNA: 3'- cUCCG-GCAUCACCuGUUGua-GCAGcu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 20518 | 0.66 | 0.965016 |
|
Target: 5'- cGGGGgCGgcGUGGugAACAcggCGUCc- -3' miRNA: 3'- -CUCCgGCauCACCugUUGUa--GCAGcu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 129690 | 0.66 | 0.96157 |
|
Target: 5'- -cGGCCGccGUGGACcGCggCGcCGAg -3' miRNA: 3'- cuCCGGCauCACCUGuUGuaGCaGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 83174 | 0.66 | 0.96157 |
|
Target: 5'- cGGGGUCGUcgcGcGGGCGGCAgagcUCGUUGAg -3' miRNA: 3'- -CUCCGGCAu--CaCCUGUUGU----AGCAGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 27573 | 0.66 | 0.96157 |
|
Target: 5'- gGGGGCCGggugGGUGGGCGAgGcUCccCGAc -3' miRNA: 3'- -CUCCGGCa---UCACCUGUUgU-AGcaGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 46230 | 1.1 | 0.00485 |
|
Target: 5'- cGAGGCCGUAGUGGACAACAUCGUCGAg -3' miRNA: 3'- -CUCCGGCAUCACCUGUUGUAGCAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home