Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29485 | 5' | -53 | NC_006151.1 | + | 46230 | 1.1 | 0.00485 |
Target: 5'- cGAGGCCGUAGUGGACAACAUCGUCGAg -3' miRNA: 3'- -CUCCGGCAUCACCUGUUGUAGCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 56652 | 0.75 | 0.575583 |
Target: 5'- cGAGGCCGUguaccgcuGGUGGACGACggCGcCGc -3' miRNA: 3'- -CUCCGGCA--------UCACCUGUUGuaGCaGCu -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 93801 | 0.74 | 0.627639 |
Target: 5'- cGAGGCCGaGGuUGGAUGGCcUCGUCGc -3' miRNA: 3'- -CUCCGGCaUC-ACCUGUUGuAGCAGCu -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 90356 | 0.7 | 0.833754 |
Target: 5'- uGAGGCUGgcGacgccGaGCAGCAUCGUCGAc -3' miRNA: 3'- -CUCCGGCauCa----CcUGUUGUAGCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 84673 | 0.7 | 0.842134 |
Target: 5'- cGAGGCCGaGGUGGACgAGCAgcugCGGc -3' miRNA: 3'- -CUCCGGCaUCACCUG-UUGUagcaGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 69708 | 0.7 | 0.842134 |
Target: 5'- -uGGCCGccgccGG-GGGCAGCAgcgCGUCGAu -3' miRNA: 3'- cuCCGGCa----UCaCCUGUUGUa--GCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 23261 | 0.7 | 0.850315 |
Target: 5'- gGGGGCauCGccGUGGACGACcUCGUCGu -3' miRNA: 3'- -CUCCG--GCauCACCUGUUGuAGCAGCu -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 80817 | 0.7 | 0.873592 |
Target: 5'- gGAGGCCaccacGUAGgccgGGACAcgggcgcgaGCcgCGUCGAc -3' miRNA: 3'- -CUCCGG-----CAUCa---CCUGU---------UGuaGCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 127540 | 0.69 | 0.901454 |
Target: 5'- cGGGGCCcaGG-GGGCGuCGUCGUCGu -3' miRNA: 3'- -CUCCGGcaUCaCCUGUuGUAGCAGCu -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 44527 | 0.68 | 0.913943 |
Target: 5'- cGGGCgagaagagcgaUGUGGUGGugGugGUgGUCGAu -3' miRNA: 3'- cUCCG-----------GCAUCACCugUugUAgCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 23791 | 0.68 | 0.930819 |
Target: 5'- cGGGGuCCG-AGgagcgGGACGAUA-CGUCGAg -3' miRNA: 3'- -CUCC-GGCaUCa----CCUGUUGUaGCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 77923 | 0.68 | 0.930819 |
Target: 5'- -cGGCCGUGGUGGugAaggGCGggcgCG-CGGc -3' miRNA: 3'- cuCCGGCAUCACCugU---UGUa---GCaGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 75836 | 0.68 | 0.930819 |
Target: 5'- -cGGCCGUGGUc-ACAGCAcccCGUCGAc -3' miRNA: 3'- cuCCGGCAUCAccUGUUGUa--GCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 73927 | 0.67 | 0.949843 |
Target: 5'- cAGGCCGUGGU--GCAGCGagcCGUCGu -3' miRNA: 3'- cUCCGGCAUCAccUGUUGUa--GCAGCu -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 97384 | 0.67 | 0.953584 |
Target: 5'- cGGGGgcgucggccucguCCGUGccGUGGAUcGCGUUGUCGAc -3' miRNA: 3'- -CUCC-------------GGCAU--CACCUGuUGUAGCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 70803 | 0.67 | 0.955579 |
Target: 5'- -uGGCCGUcGUGGGCAGCuaccggcgcagcuggAUCGugcUCGGc -3' miRNA: 3'- cuCCGGCAuCACCUGUUG---------------UAGC---AGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 129690 | 0.66 | 0.96157 |
Target: 5'- -cGGCCGccGUGGACcGCggCGcCGAg -3' miRNA: 3'- cuCCGGCauCACCUGuUGuaGCaGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 27573 | 0.66 | 0.96157 |
Target: 5'- gGGGGCCGggugGGUGGGCGAgGcUCccCGAc -3' miRNA: 3'- -CUCCGGCa---UCACCUGUUgU-AGcaGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 83174 | 0.66 | 0.96157 |
Target: 5'- cGGGGUCGUcgcGcGGGCGGCAgagcUCGUUGAg -3' miRNA: 3'- -CUCCGGCAu--CaCCUGUUGU----AGCAGCU- -5' |
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29485 | 5' | -53 | NC_006151.1 | + | 76821 | 0.66 | 0.965016 |
Target: 5'- cGGGCgCGUAGUGG-CGGCccgCGUCc- -3' miRNA: 3'- cUCCG-GCAUCACCuGUUGua-GCAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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