miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 5' -53 NC_006151.1 + 6146 0.66 0.970365
Target:  5'- -cGGCCGcgAGgacGGcggccucggccucgGCGGCGUCGUCGGa -3'
miRNA:   3'- cuCCGGCa-UCa--CC--------------UGUUGUAGCAGCU- -5'
29485 5' -53 NC_006151.1 + 20518 0.66 0.965016
Target:  5'- cGGGGgCGgcGUGGugAACAcggCGUCc- -3'
miRNA:   3'- -CUCCgGCauCACCugUUGUa--GCAGcu -5'
29485 5' -53 NC_006151.1 + 23261 0.7 0.850315
Target:  5'- gGGGGCauCGccGUGGACGACcUCGUCGu -3'
miRNA:   3'- -CUCCG--GCauCACCUGUUGuAGCAGCu -5'
29485 5' -53 NC_006151.1 + 23791 0.68 0.930819
Target:  5'- cGGGGuCCG-AGgagcgGGACGAUA-CGUCGAg -3'
miRNA:   3'- -CUCC-GGCaUCa----CCUGUUGUaGCAGCU- -5'
29485 5' -53 NC_006151.1 + 27351 0.66 0.971245
Target:  5'- cGGGGUCGUGGgccgGGGCccgGGCGg-GUCGAc -3'
miRNA:   3'- -CUCCGGCAUCa---CCUG---UUGUagCAGCU- -5'
29485 5' -53 NC_006151.1 + 27573 0.66 0.96157
Target:  5'- gGGGGCCGggugGGUGGGCGAgGcUCccCGAc -3'
miRNA:   3'- -CUCCGGCa---UCACCUGUUgU-AGcaGCU- -5'
29485 5' -53 NC_006151.1 + 39501 0.66 0.976635
Target:  5'- -cGGCCGUGcUGGACucuagcucCAUCGUgGGc -3'
miRNA:   3'- cuCCGGCAUcACCUGuu------GUAGCAgCU- -5'
29485 5' -53 NC_006151.1 + 44527 0.68 0.913943
Target:  5'- cGGGCgagaagagcgaUGUGGUGGugGugGUgGUCGAu -3'
miRNA:   3'- cUCCG-----------GCAUCACCugUugUAgCAGCU- -5'
29485 5' -53 NC_006151.1 + 46230 1.1 0.00485
Target:  5'- cGAGGCCGUAGUGGACAACAUCGUCGAg -3'
miRNA:   3'- -CUCCGGCAUCACCUGUUGUAGCAGCU- -5'
29485 5' -53 NC_006151.1 + 56652 0.75 0.575583
Target:  5'- cGAGGCCGUguaccgcuGGUGGACGACggCGcCGc -3'
miRNA:   3'- -CUCCGGCA--------UCACCUGUUGuaGCaGCu -5'
29485 5' -53 NC_006151.1 + 64382 0.66 0.965016
Target:  5'- cGAGGCCGUGGccagcccgcGGcGCAGCAgCGUCc- -3'
miRNA:   3'- -CUCCGGCAUCa--------CC-UGUUGUaGCAGcu -5'
29485 5' -53 NC_006151.1 + 64555 0.66 0.974041
Target:  5'- cGAGGCCGUGGcGcGcCAGC-UCGaCGAg -3'
miRNA:   3'- -CUCCGGCAUCaC-CuGUUGuAGCaGCU- -5'
29485 5' -53 NC_006151.1 + 69708 0.7 0.842134
Target:  5'- -uGGCCGccgccGG-GGGCAGCAgcgCGUCGAu -3'
miRNA:   3'- cuCCGGCa----UCaCCUGUUGUa--GCAGCU- -5'
29485 5' -53 NC_006151.1 + 70803 0.67 0.955579
Target:  5'- -uGGCCGUcGUGGGCAGCuaccggcgcagcuggAUCGugcUCGGc -3'
miRNA:   3'- cuCCGGCAuCACCUGUUG---------------UAGC---AGCU- -5'
29485 5' -53 NC_006151.1 + 73927 0.67 0.949843
Target:  5'- cAGGCCGUGGU--GCAGCGagcCGUCGu -3'
miRNA:   3'- cUCCGGCAUCAccUGUUGUa--GCAGCu -5'
29485 5' -53 NC_006151.1 + 75836 0.68 0.930819
Target:  5'- -cGGCCGUGGUc-ACAGCAcccCGUCGAc -3'
miRNA:   3'- cuCCGGCAUCAccUGUUGUa--GCAGCU- -5'
29485 5' -53 NC_006151.1 + 76821 0.66 0.965016
Target:  5'- cGGGCgCGUAGUGG-CGGCccgCGUCc- -3'
miRNA:   3'- cUCCG-GCAUCACCuGUUGua-GCAGcu -5'
29485 5' -53 NC_006151.1 + 77923 0.68 0.930819
Target:  5'- -cGGCCGUGGUGGugAaggGCGggcgCG-CGGc -3'
miRNA:   3'- cuCCGGCAUCACCugU---UGUa---GCaGCU- -5'
29485 5' -53 NC_006151.1 + 80817 0.7 0.873592
Target:  5'- gGAGGCCaccacGUAGgccgGGACAcgggcgcgaGCcgCGUCGAc -3'
miRNA:   3'- -CUCCGG-----CAUCa---CCUGU---------UGuaGCAGCU- -5'
29485 5' -53 NC_006151.1 + 83174 0.66 0.96157
Target:  5'- cGGGGUCGUcgcGcGGGCGGCAgagcUCGUUGAg -3'
miRNA:   3'- -CUCCGGCAu--CaCCUGUUGU----AGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.