Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 127540 | 0.69 | 0.901454 |
|
Target: 5'- cGGGGCCcaGG-GGGCGuCGUCGUCGu -3' miRNA: 3'- -CUCCGGcaUCaCCUGUuGUAGCAGCu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 80817 | 0.7 | 0.873592 |
|
Target: 5'- gGAGGCCaccacGUAGgccgGGACAcgggcgcgaGCcgCGUCGAc -3' miRNA: 3'- -CUCCGG-----CAUCa---CCUGU---------UGuaGCAGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 23261 | 0.7 | 0.850315 |
|
Target: 5'- gGGGGCauCGccGUGGACGACcUCGUCGu -3' miRNA: 3'- -CUCCG--GCauCACCUGUUGuAGCAGCu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 84673 | 0.7 | 0.842134 |
|
Target: 5'- cGAGGCCGaGGUGGACgAGCAgcugCGGc -3' miRNA: 3'- -CUCCGGCaUCACCUG-UUGUagcaGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 69708 | 0.7 | 0.842134 |
|
Target: 5'- -uGGCCGccgccGG-GGGCAGCAgcgCGUCGAu -3' miRNA: 3'- cuCCGGCa----UCaCCUGUUGUa--GCAGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 90356 | 0.7 | 0.833754 |
|
Target: 5'- uGAGGCUGgcGacgccGaGCAGCAUCGUCGAc -3' miRNA: 3'- -CUCCGGCauCa----CcUGUUGUAGCAGCU- -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 93801 | 0.74 | 0.627639 |
|
Target: 5'- cGAGGCCGaGGuUGGAUGGCcUCGUCGc -3' miRNA: 3'- -CUCCGGCaUC-ACCUGUUGuAGCAGCu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 56652 | 0.75 | 0.575583 |
|
Target: 5'- cGAGGCCGUguaccgcuGGUGGACGACggCGcCGc -3' miRNA: 3'- -CUCCGGCA--------UCACCUGUUGuaGCaGCu -5' |
|||||||
| 29485 | 5' | -53 | NC_006151.1 | + | 46230 | 1.1 | 0.00485 |
|
Target: 5'- cGAGGCCGUAGUGGACAACAUCGUCGAg -3' miRNA: 3'- -CUCCGGCAUCACCUGUUGUAGCAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home