miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 129433 0.69 0.649248
Target:  5'- cGUCCggCC-CCAaGUGGGCGG-GGCGCa -3'
miRNA:   3'- -UAGGa-GGuGGUgCACCUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 85626 0.69 0.659404
Target:  5'- -gCCgCCGCCGCGcGGcgccaGCGGgGACGCg -3'
miRNA:   3'- uaGGaGGUGGUGCaCC-----UGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 119027 0.69 0.659404
Target:  5'- -cUCUCCGagGCGggcgccaaGGACGGCGGCGCc -3'
miRNA:   3'- uaGGAGGUggUGCa-------CCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 67282 0.69 0.659404
Target:  5'- -gCCUgCGCCGC-UGGuGCcGCGACGCg -3'
miRNA:   3'- uaGGAgGUGGUGcACC-UGuCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 6137 0.69 0.669539
Target:  5'- cUCCggccgCgGCCGCGaGGACGGCGGCc- -3'
miRNA:   3'- uAGGa----GgUGGUGCaCCUGUCGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 135671 0.69 0.669539
Target:  5'- cGUCCUguaCGCCAC--GGACGGCuGCGCg -3'
miRNA:   3'- -UAGGAg--GUGGUGcaCCUGUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 101432 0.69 0.669539
Target:  5'- aGUCCUUCACgCugguCGUGGuCGGCGcCGUg -3'
miRNA:   3'- -UAGGAGGUG-Gu---GCACCuGUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 57610 0.69 0.669539
Target:  5'- -gCCUCgGCCGCGgccgccucGACGGCG-CGCg -3'
miRNA:   3'- uaGGAGgUGGUGCac------CUGUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 135071 0.69 0.669539
Target:  5'- uUCCcCCGCCuccuCGggcggGGGCGGCGGgGCc -3'
miRNA:   3'- uAGGaGGUGGu---GCa----CCUGUCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 66757 0.69 0.675606
Target:  5'- uUCCgcgaCGCCGCGacggccgcccucgGGACGGCGGCGg -3'
miRNA:   3'- uAGGag--GUGGUGCa------------CCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 52593 0.69 0.679643
Target:  5'- -gCCgcCCugCGCGUGGACgaaGGCGucguCGCg -3'
miRNA:   3'- uaGGa-GGugGUGCACCUG---UCGCu---GCG- -5'
29486 3' -57.5 NC_006151.1 + 116970 0.69 0.679643
Target:  5'- -aCCUCCACguCGcUGGAC-GUGAgGCg -3'
miRNA:   3'- uaGGAGGUGguGC-ACCUGuCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 11228 0.69 0.679643
Target:  5'- cUUCUCCcggGCCGCGaGGGCcGCGGCGg -3'
miRNA:   3'- uAGGAGG---UGGUGCaCCUGuCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 40396 0.69 0.679643
Target:  5'- cUCCUCCuCUGCGUccGCGGCGGCGg -3'
miRNA:   3'- uAGGAGGuGGUGCAccUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 89696 0.69 0.689709
Target:  5'- -aCggCCGCCGCGUccaGGAaccCGGCGGCGCc -3'
miRNA:   3'- uaGgaGGUGGUGCA---CCU---GUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 3662 0.69 0.689709
Target:  5'- cGUCCUCCucGCCGucccCG-GGGCGGCGggccccggGCGCg -3'
miRNA:   3'- -UAGGAGG--UGGU----GCaCCUGUCGC--------UGCG- -5'
29486 3' -57.5 NC_006151.1 + 38525 0.69 0.689709
Target:  5'- cUCCcCCGCCGcCGgcccGGACccagcgcccgAGCGGCGCa -3'
miRNA:   3'- uAGGaGGUGGU-GCa---CCUG----------UCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 37380 0.69 0.699728
Target:  5'- -cCCUCCggccgacgGCCGCGUccgcuACGGCGGCGCc -3'
miRNA:   3'- uaGGAGG--------UGGUGCAcc---UGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 38833 0.69 0.699728
Target:  5'- -gCUUCCGCCGCGUcccGGcCGGCGAgacccacacgcCGCg -3'
miRNA:   3'- uaGGAGGUGGUGCA---CCuGUCGCU-----------GCG- -5'
29486 3' -57.5 NC_006151.1 + 142979 0.69 0.699728
Target:  5'- -aCCUCCuGCCGCG-GGugGGCccGACcGCa -3'
miRNA:   3'- uaGGAGG-UGGUGCaCCugUCG--CUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.