miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 40049 0.66 0.573112
Target:  5'- gGGGCG-CCGUGGAgacccaccggcccgcGGGGGCcuCGGGc -3'
miRNA:   3'- -UCUGCgGGCACCU---------------CCCCCGcuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 130694 0.66 0.569252
Target:  5'- aGGAUGUCCG-GGGGcccgacGGGGCGGCccGGGg -3'
miRNA:   3'- -UCUGCGGGCaCCUC------CCCCGCUG--CCUa -5'
29486 5' -63.7 NC_006151.1 + 28222 0.66 0.569252
Target:  5'- --uCGcCCCGUcGAGGGGGCcgggccGACGGGc -3'
miRNA:   3'- ucuGC-GGGCAcCUCCCCCG------CUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 89156 0.66 0.559631
Target:  5'- -cGCGCCCGccucggGcGAGGcGGGCG-CGGGg -3'
miRNA:   3'- ucUGCGGGCa-----C-CUCC-CCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 91685 0.66 0.559631
Target:  5'- uGGUGCgCGUGGGuGGGGUGGCGGu- -3'
miRNA:   3'- uCUGCGgGCACCUcCCCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 88815 0.66 0.559631
Target:  5'- -cGCGUCCGguggGcGAGGGaGGCGuugGCGGAg -3'
miRNA:   3'- ucUGCGGGCa---C-CUCCC-CCGC---UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 49143 0.66 0.559631
Target:  5'- -cGCGCCCGcccacggcugccUGGAGGccuGGGCGcgccGCGGGg -3'
miRNA:   3'- ucUGCGGGC------------ACCUCC---CCCGC----UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 27945 0.66 0.559631
Target:  5'- cGAuCGCgCGggguggggagGGAGGGGG-GACGGGg -3'
miRNA:   3'- uCU-GCGgGCa---------CCUCCCCCgCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 110029 0.66 0.550056
Target:  5'- uGGgGCCUGgaggacgaGGAGGGGGacgagGACGGGg -3'
miRNA:   3'- uCUgCGGGCa-------CCUCCCCCg----CUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 20303 0.66 0.550056
Target:  5'- cGGGCGCCCGccgUGGcGuuGGCGGCGGc- -3'
miRNA:   3'- -UCUGCGGGC---ACCuCccCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 78721 0.66 0.540532
Target:  5'- cGGCGCCCGUGGGGcGcGCGcuGCGGc- -3'
miRNA:   3'- uCUGCGGGCACCUCcCcCGC--UGCCua -5'
29486 5' -63.7 NC_006151.1 + 102987 0.66 0.540532
Target:  5'- uGGCGCagCUGcUGGAGGcGGGCGA-GGAc -3'
miRNA:   3'- uCUGCG--GGC-ACCUCC-CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 65121 0.66 0.540532
Target:  5'- aGGACGCCCGUcGGcGGGcuccgcgccaGCGACGuGAUc -3'
miRNA:   3'- -UCUGCGGGCA-CCuCCCc---------CGCUGC-CUA- -5'
29486 5' -63.7 NC_006151.1 + 23001 0.66 0.540532
Target:  5'- cGGcCGCgCG-GGuGGGGGCG-CGGGg -3'
miRNA:   3'- -UCuGCGgGCaCCuCCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 54623 0.66 0.540532
Target:  5'- cGGGCGCgCCccGGGGGGaagcGGCGGCGcGAg -3'
miRNA:   3'- -UCUGCG-GGcaCCUCCC----CCGCUGC-CUa -5'
29486 5' -63.7 NC_006151.1 + 66904 0.66 0.537685
Target:  5'- aGGACGCCgccgaggagggccaCGaUGGAggcGGGGGCGAgGGc- -3'
miRNA:   3'- -UCUGCGG--------------GC-ACCU---CCCCCGCUgCCua -5'
29486 5' -63.7 NC_006151.1 + 78634 0.66 0.534844
Target:  5'- cGGACGCCgacgCGUGcGAGcugguggaggcggccGGGGCG-CGGGUg -3'
miRNA:   3'- -UCUGCGG----GCAC-CUC---------------CCCCGCuGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 111840 0.66 0.531064
Target:  5'- aAGACGCaCCGcgucGGGGGGCGcuCGGGg -3'
miRNA:   3'- -UCUGCG-GGCacc-UCCCCCGCu-GCCUa -5'
29486 5' -63.7 NC_006151.1 + 41173 0.66 0.531064
Target:  5'- uGGugGUCCugcgGUGGucgaGGGGGGUGGgGGGg -3'
miRNA:   3'- -UCugCGGG----CACC----UCCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 11806 0.66 0.531064
Target:  5'- gGGGCGgg-GUGGgguGGGGGGCGGCGGc- -3'
miRNA:   3'- -UCUGCgggCACC---UCCCCCGCUGCCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.