miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 101288 0.7 0.495761
Target:  5'- aGGGCGCGGGCgGC-GCCGcGC-UGCAc -3'
miRNA:   3'- cUCCGCGUCUG-CGaCGGCaCGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 124054 0.7 0.495761
Target:  5'- -cGGCGaccuGGACGCgcggacgGCCGUGCGcGCGg -3'
miRNA:   3'- cuCCGCg---UCUGCGa------CGGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 35163 0.69 0.505399
Target:  5'- -uGGcCGCAGA-GCggGCCGgGCAUGCAa -3'
miRNA:   3'- cuCC-GCGUCUgCGa-CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 58396 0.69 0.505399
Target:  5'- -cGGCGCAGccggccauggcGCGCaGCUGgGCGUGCGg -3'
miRNA:   3'- cuCCGCGUC-----------UGCGaCGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 122962 0.69 0.52491
Target:  5'- gGGGGCGCGGACGCcgGCgaCGgggGCGUcgGCGa -3'
miRNA:   3'- -CUCCGCGUCUGCGa-CG--GCa--CGUA--CGU- -5'
29487 3' -59.3 NC_006151.1 + 113339 0.69 0.52491
Target:  5'- -uGGCGCuGGCGCUGaagcaCGUGCGcgGCc -3'
miRNA:   3'- cuCCGCGuCUGCGACg----GCACGUa-CGu -5'
29487 3' -59.3 NC_006151.1 + 75429 0.69 0.534772
Target:  5'- -cGGCGUGGGCGCgaagcUGCCG-GCGUgGCGc -3'
miRNA:   3'- cuCCGCGUCUGCG-----ACGGCaCGUA-CGU- -5'
29487 3' -59.3 NC_006151.1 + 104567 0.69 0.534772
Target:  5'- uGGGCGCGcGGCGCgcgGaCGUGC-UGCAg -3'
miRNA:   3'- cUCCGCGU-CUGCGa--CgGCACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 105191 0.69 0.538736
Target:  5'- cGAGGCGCugcAGACGCUGCgccaggaggcggacaCGcUGCG-GCAg -3'
miRNA:   3'- -CUCCGCG---UCUGCGACG---------------GC-ACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 53257 0.69 0.544699
Target:  5'- -uGGCGCGcacgcGGCacaGCUGCCGcGCGUGCu -3'
miRNA:   3'- cuCCGCGU-----CUG---CGACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 137012 0.69 0.554685
Target:  5'- -cGGCGCuGGGCGCccugcucggccUGCCGgacGCGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGCG-----------ACGGCa--CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 105706 0.68 0.560703
Target:  5'- -cGGCGCGGcCGCgcgccucgacggcGCCGUGCGcGCGc -3'
miRNA:   3'- cuCCGCGUCuGCGa------------CGGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 35079 0.68 0.564725
Target:  5'- cGGGgGUGGGuCGCgUGCCGaGCAUGCGc -3'
miRNA:   3'- cUCCgCGUCU-GCG-ACGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 99123 0.68 0.564725
Target:  5'- -uGGCGCugcuggaccccgGGGCGCagGCCGUGCAcGUg -3'
miRNA:   3'- cuCCGCG------------UCUGCGa-CGGCACGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 4223 0.68 0.574811
Target:  5'- cGGGGCGCgggcGGGCGCgggcaGCCGgagcggGCAggGCAg -3'
miRNA:   3'- -CUCCGCG----UCUGCGa----CGGCa-----CGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 69968 0.68 0.574811
Target:  5'- cGGGGCcgcGCGGGCGCUGCa--GCGgcgGCAg -3'
miRNA:   3'- -CUCCG---CGUCUGCGACGgcaCGUa--CGU- -5'
29487 3' -59.3 NC_006151.1 + 71091 0.68 0.581896
Target:  5'- -cGGCGCcgcGGGCGCgggcGCCGUGCGcuaccccuucuuccUGCu -3'
miRNA:   3'- cuCCGCG---UCUGCGa---CGGCACGU--------------ACGu -5'
29487 3' -59.3 NC_006151.1 + 78476 0.68 0.584938
Target:  5'- cGAGGUgauGCGGAUGCUcgugaacgccGCCGUG-GUGCAc -3'
miRNA:   3'- -CUCCG---CGUCUGCGA----------CGGCACgUACGU- -5'
29487 3' -59.3 NC_006151.1 + 141613 0.68 0.584938
Target:  5'- cGAGGCugccgggaucggGCGGGuCGCUGCCGcgGCGgcgcgGCGg -3'
miRNA:   3'- -CUCCG------------CGUCU-GCGACGGCa-CGUa----CGU- -5'
29487 3' -59.3 NC_006151.1 + 97909 0.68 0.591031
Target:  5'- gGAGGCGCGGAUGCcgucgccgccgagGCCGcGCccGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGa------------CGGCaCGuaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.