miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 5' -57.5 NC_006151.1 + 138286 0.67 0.778885
Target:  5'- aCUGGGuccucuuccagcuCUGCggGUCCGcGCGCUucagcugccugcGGGCCCg -3'
miRNA:   3'- aGACCU-------------GACG--UAGGU-CGCGA------------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 137806 0.67 0.788985
Target:  5'- --gGGACUuCAUCgAGCccaUGGGCCCg -3'
miRNA:   3'- agaCCUGAcGUAGgUCGcg-ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 136998 0.66 0.806906
Target:  5'- --cGGGCgcgcGCG-CaCGGCGCUGGGCgCCc -3'
miRNA:   3'- agaCCUGa---CGUaG-GUCGCGACCUG-GG- -5'
29487 5' -57.5 NC_006151.1 + 136334 0.66 0.824197
Target:  5'- -gUGGACccCAaccCCAGCGgcCUGGACCCc -3'
miRNA:   3'- agACCUGacGUa--GGUCGC--GACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 134739 0.66 0.840794
Target:  5'- --gGGACUuuGUCgccccgagCAGCGCgcgcgGGGCCCg -3'
miRNA:   3'- agaCCUGAcgUAG--------GUCGCGa----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 134609 0.67 0.77981
Target:  5'- cCUGGAgU-CGggCCAGCGCgUGG-CCCa -3'
miRNA:   3'- aGACCUgAcGUa-GGUCGCG-ACCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 132808 0.71 0.55047
Target:  5'- gCUGGuACagcGCGUCCGG-GCUGGccGCCCg -3'
miRNA:   3'- aGACC-UGa--CGUAGGUCgCGACC--UGGG- -5'
29487 5' -57.5 NC_006151.1 + 129779 0.67 0.77981
Target:  5'- --aGGGCgucGCucccgCCGGCG-UGGGCCCg -3'
miRNA:   3'- agaCCUGa--CGua---GGUCGCgACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 125382 0.69 0.6924
Target:  5'- gCUGGGCcGCAUCgCGGCcGCcUGGugCg -3'
miRNA:   3'- aGACCUGaCGUAG-GUCG-CG-ACCugGg -5'
29487 5' -57.5 NC_006151.1 + 121756 0.7 0.631459
Target:  5'- aCUGGAgaUGCuga-AGCGCUGcGACCCc -3'
miRNA:   3'- aGACCUg-ACGuaggUCGCGAC-CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 121428 0.69 0.651857
Target:  5'- gUCgcgGGGCUcGCG-CCGGCcucGCUGGugCCc -3'
miRNA:   3'- -AGa--CCUGA-CGUaGGUCG---CGACCugGG- -5'
29487 5' -57.5 NC_006151.1 + 118719 0.71 0.55047
Target:  5'- cUCUGccgccuGCUGCAcggCUAcGUGCUGGGCCCg -3'
miRNA:   3'- -AGACc-----UGACGUa--GGU-CGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 118315 0.66 0.84802
Target:  5'- --gGGACUGCGUgCCcccgagcAGCGCcGcGCCCg -3'
miRNA:   3'- agaCCUGACGUA-GG-------UCGCGaCcUGGG- -5'
29487 5' -57.5 NC_006151.1 + 116981 0.7 0.631459
Target:  5'- gCUGGACgUGa----GGCGCUGGugCCg -3'
miRNA:   3'- aGACCUG-ACguaggUCGCGACCugGG- -5'
29487 5' -57.5 NC_006151.1 + 113427 0.67 0.770504
Target:  5'- gCUGGcGCUGCGccgcuUCCGGCGC-GGcguGCUCa -3'
miRNA:   3'- aGACC-UGACGU-----AGGUCGCGaCC---UGGG- -5'
29487 5' -57.5 NC_006151.1 + 111457 0.69 0.672194
Target:  5'- --aGGcGCUGCGUCUgcgaGGCGUcgucgGGGCCCa -3'
miRNA:   3'- agaCC-UGACGUAGG----UCGCGa----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 106321 0.7 0.580601
Target:  5'- gCUGGACgcggUGCuggaCCGcGCGCUGGACgCg -3'
miRNA:   3'- aGACCUG----ACGua--GGU-CGCGACCUGgG- -5'
29487 5' -57.5 NC_006151.1 + 106171 0.69 0.66102
Target:  5'- gCUGGACcGCGUcgcgcacCCGcCGCUGGAgCCg -3'
miRNA:   3'- aGACCUGaCGUA-------GGUcGCGACCUgGG- -5'
29487 5' -57.5 NC_006151.1 + 105423 0.66 0.806024
Target:  5'- uUCgugGGGC-GCAUCgagagcaaguacuCGGCGCgcgccgGGGCCCu -3'
miRNA:   3'- -AGa--CCUGaCGUAG-------------GUCGCGa-----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 104904 0.66 0.822498
Target:  5'- -gUGGACgcgGCGg-CGGCGCgcgaccgcgacgGGGCCCu -3'
miRNA:   3'- agACCUGa--CGUagGUCGCGa-----------CCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.