miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 131553 0.7 0.447303
Target:  5'- cCUCgggCGCCGCaCGg-GCCCCGCGUCg- -3'
miRNA:   3'- -GAGa--GUGGUG-GCaaCGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 29229 0.7 0.447303
Target:  5'- --gUCACCGCCGggucgGCCgCGC-CCCGa -3'
miRNA:   3'- gagAGUGGUGGCaa---CGGgGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 6745 0.69 0.456126
Target:  5'- uUCUCGCCcgcuuccucuGCCGUcUGCUuuGCauGCCCGg -3'
miRNA:   3'- gAGAGUGG----------UGGCA-ACGGggCG--CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 80554 0.69 0.456126
Target:  5'- aCUCUCGugaugucaucCCGCCGUcuCCCCgacggacgGCGCCCGu -3'
miRNA:   3'- -GAGAGU----------GGUGGCAacGGGG--------CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 136870 0.69 0.456126
Target:  5'- --gUgACCGCCGUcgaggagcGCCUCGCGCCCc -3'
miRNA:   3'- gagAgUGGUGGCAa-------CGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 48193 0.69 0.456126
Target:  5'- aUCUUcgaGCCGCCGgucaCgCCCGCGCCCc -3'
miRNA:   3'- gAGAG---UGGUGGCaac-G-GGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 50830 0.69 0.456126
Target:  5'- cCUCggcccgCGCCGCCGUccccucgGCggccgcccuCCCGCGCCCc -3'
miRNA:   3'- -GAGa-----GUGGUGGCAa------CG---------GGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 93082 0.69 0.465041
Target:  5'- gUCUCACCucuGCCGUccCCCCGcCGUCCc -3'
miRNA:   3'- gAGAGUGG---UGGCAacGGGGC-GCGGGc -5'
29488 3' -61.6 NC_006151.1 + 55454 0.69 0.465041
Target:  5'- ---gCGCCGCCG--GCCCCGCcggggggcgcgcGCCCGg -3'
miRNA:   3'- gagaGUGGUGGCaaCGGGGCG------------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 51654 0.69 0.474046
Target:  5'- -gCUCGCUgauGCCGUUGUCCCGCucggGCUCc -3'
miRNA:   3'- gaGAGUGG---UGGCAACGGGGCG----CGGGc -5'
29488 3' -61.6 NC_006151.1 + 101832 0.69 0.474046
Target:  5'- gUCUCggcgGCCGCCGc--CCCCGC-CCCGg -3'
miRNA:   3'- gAGAG----UGGUGGCaacGGGGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 58561 0.69 0.474046
Target:  5'- cCUCuUCGCCGCCGccGCCCgccggcguCGCGgCCGu -3'
miRNA:   3'- -GAG-AGUGGUGGCaaCGGG--------GCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 39973 0.69 0.483138
Target:  5'- --gUCGCCGCCGcgggcGCCCCGcCGgCCGu -3'
miRNA:   3'- gagAGUGGUGGCaa---CGGGGC-GCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 136836 0.69 0.483138
Target:  5'- gCUCUgcgaCGCgGCCGccgGCCUCGCGCgCCGc -3'
miRNA:   3'- -GAGA----GUGgUGGCaa-CGGGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 13596 0.69 0.483138
Target:  5'- --aUC-CCGCCGuUUGCCCCacGUGCCCc -3'
miRNA:   3'- gagAGuGGUGGC-AACGGGG--CGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 97924 0.69 0.492313
Target:  5'- --gUCGCCGCCGagGCCgCGCccGCCCu -3'
miRNA:   3'- gagAGUGGUGGCaaCGGgGCG--CGGGc -5'
29488 3' -61.6 NC_006151.1 + 66563 0.69 0.492313
Target:  5'- ---gCGCCGCCGUgGaCCCgGCGCUCGc -3'
miRNA:   3'- gagaGUGGUGGCAaC-GGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 20277 0.69 0.492313
Target:  5'- ---gCACCAuggcuaucuucCCGggGCCCCggGCGCCCGc -3'
miRNA:   3'- gagaGUGGU-----------GGCaaCGGGG--CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37931 0.69 0.493235
Target:  5'- -cUUCGCCGCCGcgcagcccggccgcgUGCCCCGCGagCUGg -3'
miRNA:   3'- gaGAGUGGUGGCa--------------ACGGGGCGCg-GGC- -5'
29488 3' -61.6 NC_006151.1 + 137255 0.69 0.501567
Target:  5'- aCUUUCGCC-UCGcgcGCCCgGUGCCCGc -3'
miRNA:   3'- -GAGAGUGGuGGCaa-CGGGgCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.