miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29489 3' -51 NC_006151.1 + 64222 0.66 0.992005
Target:  5'- uGGGCGCcUCGGCGUacaggGCCgcgacggcggCGCg -3'
miRNA:   3'- gCCUGCGuAGUCGCA-----CGGaaaaa-----GUG- -5'
29489 3' -51 NC_006151.1 + 60022 0.66 0.991546
Target:  5'- -uGACGCucGUCAGCGUGCag----CGCu -3'
miRNA:   3'- gcCUGCG--UAGUCGCACGgaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 4293 0.66 0.991546
Target:  5'- aGGACGCA--GGCGUccGCCagc-UCGCg -3'
miRNA:   3'- gCCUGCGUagUCGCA--CGGaaaaAGUG- -5'
29489 3' -51 NC_006151.1 + 122487 0.66 0.990307
Target:  5'- gGGACGCGggcgagaCGGCGcGCCggcg-CGCg -3'
miRNA:   3'- gCCUGCGUa------GUCGCaCGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 80895 0.66 0.990307
Target:  5'- gGGAagaGCAUCAG-G-GCCUUgacgUCGCc -3'
miRNA:   3'- gCCUg--CGUAGUCgCaCGGAAaa--AGUG- -5'
29489 3' -51 NC_006151.1 + 20978 0.66 0.98893
Target:  5'- uGGGCGCGUCgccgggcacgaggacGGCGcUGCCggcgacgugCACg -3'
miRNA:   3'- gCCUGCGUAG---------------UCGC-ACGGaaaaa----GUG- -5'
29489 3' -51 NC_006151.1 + 94948 0.66 0.987405
Target:  5'- gCGGACGCG-CAGCGcGUCccag-CGCa -3'
miRNA:   3'- -GCCUGCGUaGUCGCaCGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 59367 0.66 0.985724
Target:  5'- gGGGCGCcgC-GCG-GCCgucgUCGCg -3'
miRNA:   3'- gCCUGCGuaGuCGCaCGGaaaaAGUG- -5'
29489 3' -51 NC_006151.1 + 57289 0.66 0.985724
Target:  5'- aGGGCGUc-CAGCGcgGCCUUggcggCGCg -3'
miRNA:   3'- gCCUGCGuaGUCGCa-CGGAAaaa--GUG- -5'
29489 3' -51 NC_006151.1 + 45172 0.67 0.983876
Target:  5'- aCGGACGgGgUGGCGUGCCcgccacCACg -3'
miRNA:   3'- -GCCUGCgUaGUCGCACGGaaaaa-GUG- -5'
29489 3' -51 NC_006151.1 + 69089 0.67 0.983876
Target:  5'- aCGGccaGC-UCGGCGUGCCgccg-CACc -3'
miRNA:   3'- -GCCug-CGuAGUCGCACGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 29118 0.67 0.981852
Target:  5'- gGGAcCGCAUC-GCGgGCCgggaagUCGCg -3'
miRNA:   3'- gCCU-GCGUAGuCGCaCGGaaaa--AGUG- -5'
29489 3' -51 NC_006151.1 + 64929 0.67 0.981639
Target:  5'- aCGGcguacucGCGCGUCAGCGccugGCCg----CGCu -3'
miRNA:   3'- -GCC-------UGCGUAGUCGCa---CGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 127526 0.67 0.97724
Target:  5'- cCGuGGCGCGUCAGCGggGCCc------- -3'
miRNA:   3'- -GC-CUGCGUAGUCGCa-CGGaaaaagug -5'
29489 3' -51 NC_006151.1 + 4166 0.67 0.97724
Target:  5'- gCGGAgCGCGagCAGCGcgGCCg---UCACc -3'
miRNA:   3'- -GCCU-GCGUa-GUCGCa-CGGaaaaAGUG- -5'
29489 3' -51 NC_006151.1 + 73386 0.67 0.974634
Target:  5'- gGGGCGCG-CAGCGcgGCCgc---CGCg -3'
miRNA:   3'- gCCUGCGUaGUCGCa-CGGaaaaaGUG- -5'
29489 3' -51 NC_006151.1 + 27085 0.67 0.974634
Target:  5'- aGGGCGCGgcgCAgggcgcGCGUGUCgcccgUCACg -3'
miRNA:   3'- gCCUGCGUa--GU------CGCACGGaaaa-AGUG- -5'
29489 3' -51 NC_006151.1 + 101325 0.68 0.971818
Target:  5'- gCGGGUGCA-CGGCGagUGCaaCUUUUUCACg -3'
miRNA:   3'- -GCCUGCGUaGUCGC--ACG--GAAAAAGUG- -5'
29489 3' -51 NC_006151.1 + 112856 0.68 0.968784
Target:  5'- uGGACGUG-CAGCG-GCaCUUUUUCcuGCa -3'
miRNA:   3'- gCCUGCGUaGUCGCaCG-GAAAAAG--UG- -5'
29489 3' -51 NC_006151.1 + 81780 0.68 0.962033
Target:  5'- gGGACGCGcUCGGCGcGCCcg--UCGa -3'
miRNA:   3'- gCCUGCGU-AGUCGCaCGGaaaaAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.