miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 127782 0.7 0.594578
Target:  5'- gCCcUCCccCUC--CCCCGCCGCCGCGc -3'
miRNA:   3'- aGGuAGGu-GAGuaGGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 86954 0.7 0.598635
Target:  5'- gCCAUCguCUCGgccgccauggaccgCCgCCACCGCCGCu -3'
miRNA:   3'- aGGUAGguGAGUa-------------GG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 69445 0.7 0.604729
Target:  5'- gCCGUUCGC--GUCCUCGCgCGCCGCGg -3'
miRNA:   3'- aGGUAGGUGagUAGGGGUG-GUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 141901 0.7 0.604729
Target:  5'- cUCCAccUCCACgcg-CCCCGCgGCCGUu -3'
miRNA:   3'- -AGGU--AGGUGaguaGGGGUGgUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 1689 0.7 0.604729
Target:  5'- gCCcUCCGCcgCggCCgCCGCCGCCGCu -3'
miRNA:   3'- aGGuAGGUGa-GuaGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 36404 0.7 0.604729
Target:  5'- cCCGggCGCUCGUCCCC-CU-CCGCAg -3'
miRNA:   3'- aGGUagGUGAGUAGGGGuGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 62696 0.7 0.625084
Target:  5'- cCUGUCC-CUUGUCCCCGgucccgccCCGCCGCc -3'
miRNA:   3'- aGGUAGGuGAGUAGGGGU--------GGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 65759 0.7 0.625084
Target:  5'- cUCGUCC-C-CGUCCCCGUCGCCGCc -3'
miRNA:   3'- aGGUAGGuGaGUAGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 24995 0.7 0.625084
Target:  5'- cCCGUCaucgucgucCUCGUCCCCGCUGCUGUc -3'
miRNA:   3'- aGGUAGgu-------GAGUAGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 37158 0.69 0.634255
Target:  5'- gCCG-CCAC-CGUCUCCGCCggcgcccGCCGCGg -3'
miRNA:   3'- aGGUaGGUGaGUAGGGGUGG-------UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 69503 0.69 0.635274
Target:  5'- cCCGcgCCGC-C-UCCuCCGCCGCCGCGc -3'
miRNA:   3'- aGGUa-GGUGaGuAGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 109429 0.69 0.645461
Target:  5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3'
miRNA:   3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5'
29492 3' -57.6 NC_006151.1 + 109393 0.69 0.645461
Target:  5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3'
miRNA:   3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5'
29492 3' -57.6 NC_006151.1 + 58554 0.69 0.645461
Target:  5'- gUCGUCUcCUCuUCgCCGCCGCCGCc -3'
miRNA:   3'- aGGUAGGuGAGuAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 40387 0.69 0.645461
Target:  5'- cCCGUCCucCUCcUCCUCugCGuCCGCGg -3'
miRNA:   3'- aGGUAGGu-GAGuAGGGGugGU-GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 13040 0.69 0.645461
Target:  5'- cCCGgcggUgACcCAUCCCCACCccGCCGCGc -3'
miRNA:   3'- aGGUa---GgUGaGUAGGGGUGG--UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 36782 0.69 0.645461
Target:  5'- cCCAacUCCaACUCcaacUCCaCCACCACCGUc -3'
miRNA:   3'- aGGU--AGG-UGAGu---AGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 85597 0.69 0.655637
Target:  5'- uUCCAgcucggCgCGCUCGUgCCCaacgcgccGCCGCCGCGc -3'
miRNA:   3'- -AGGUa-----G-GUGAGUAgGGG--------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 79753 0.69 0.655637
Target:  5'- aUCCAggcCCGCggGUCCCCGguCCACgGCGg -3'
miRNA:   3'- -AGGUa--GGUGagUAGGGGU--GGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 32238 0.69 0.655637
Target:  5'- cUCCuggCCGCggCGaCCgCCGCCGCCGCu -3'
miRNA:   3'- -AGGua-GGUGa-GUaGG-GGUGGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.