Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29493 | 3' | -52.8 | NC_006151.1 | + | 45319 | 0.66 | 0.970018 |
Target: 5'- --cGGGaggCUGGGAGGGUggcggugGAGGACGg -3' miRNA: 3'- cauCCCga-GGUCUUCCCAa------CUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 45461 | 0.69 | 0.86816 |
Target: 5'- -cGGGGCggcgaCGGAcccAGGGgUGAGAGCGg -3' miRNA: 3'- caUCCCGag---GUCU---UCCCaACUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 72577 | 0.66 | 0.96687 |
Target: 5'- -gGGGGCgggugaCAGAgucGGGGUgaggggGGGGGCAg -3' miRNA: 3'- caUCCCGag----GUCU---UCCCAa-----CUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 99485 | 0.77 | 0.481602 |
Target: 5'- cUGGGGCUCCccgAGAAGGGcgUG-GAGCAc -3' miRNA: 3'- cAUCCCGAGG---UCUUCCCa-ACuCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 110028 | 0.66 | 0.96687 |
Target: 5'- cUGGGGC-CUggaggacgaGGAGGGGgacGAGGACGg -3' miRNA: 3'- cAUCCCGaGG---------UCUUCCCaa-CUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 110794 | 0.67 | 0.927742 |
Target: 5'- -cGGGGCUagGGcGGGGGgcGAGGGCAg -3' miRNA: 3'- caUCCCGAggUC-UUCCCaaCUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 121661 | 0.66 | 0.970018 |
Target: 5'- --cGGGCgggCGGAGGGGggGAgcGAGCGg -3' miRNA: 3'- cauCCCGag-GUCUUCCCaaCU--CUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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