miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
29493	3'	-52.8	NC_006151.1	+	110028	0.66	0.96687
	Target:  5'- cUGGGGC-CUggaggacgaGGAGGGGgacGAGGACGg -3' miRNA:   3'- cAUCCCGaGG---------UCUUCCCaa-CUCUUGU- -5'
29493	3'	-52.8	NC_006151.1	+	72577	0.66	0.96687
	Target:  5'- -gGGGGCgggugaCAGAgucGGGGUgaggggGGGGGCAg -3' miRNA:   3'- caUCCCGag----GUCU---UCCCAa-----CUCUUGU- -5'
29493	3'	-52.8	NC_006151.1	+	44476	0.66	0.963496
	Target:  5'- -gAGGGUggaCGGggGGGgugGGGGAUg -3' miRNA:   3'- caUCCCGag-GUCuuCCCaa-CUCUUGu -5'
29493	3'	-52.8	NC_006151.1	+	26246	0.66	0.963496
	Target:  5'- -gAGGGCacaaCAGAGGGGagGGGGAgAg -3' miRNA:   3'- caUCCCGag--GUCUUCCCaaCUCUUgU- -5'
29493	3'	-52.8	NC_006151.1	+	27309	0.66	0.959889
	Target:  5'- cGUGGGGgUCgAGgcGGGggacgGGGGGCu -3' miRNA:   3'- -CAUCCCgAGgUCuuCCCaa---CUCUUGu -5'
29493	3'	-52.8	NC_006151.1	+	17116	0.66	0.956044
	Target:  5'- -gGGGGCUCCGGcGGcGGUgcugcGGGAGg- -3' miRNA:   3'- caUCCCGAGGUCuUC-CCAa----CUCUUgu -5'
29493	3'	-52.8	NC_006151.1	+	43132	1.08	0.005273
	Target:  5'- gGUAGGGCUCCAGAAGGGUUGAGAACAc -3' miRNA:   3'- -CAUCCCGAGGUCUUCCCAACUCUUGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home