miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 42984 1.09 0.001482
Target:  5'- gAGAGAGAAGAGAUGCGGGGGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUACGCCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 29658 0.87 0.050224
Target:  5'- uGGGGGGAGGAGGaagGgGGGGGGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa--CgCCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 27536 0.85 0.069171
Target:  5'- gGGGGGGggGGGggGgGGGGGGGGGCu -3'
miRNA:   3'- -UCUCUCuuCUCuaCgCCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 22507 0.84 0.078956
Target:  5'- gAGAGAGggGGGGaaucGCGGGGGAgucGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUa---CGCCCCCU---CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 29349 0.83 0.10263
Target:  5'- gGGGGGGggGAGAggggGCGGGGaGcGGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUa---CGCCCC-C-UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 29448 0.82 0.116843
Target:  5'- cGGGGAGAGGGGAcGCGGaGGGAgcGGGCGc -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCC-CCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 11725 0.81 0.139838
Target:  5'- cGAGAGggGGGA-GCGGGGGugAGGGgGa -3'
miRNA:   3'- uCUCUCuuCUCUaCGCCCCC--UCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 34387 0.8 0.148635
Target:  5'- gAGAGAGAuAGAGggGUGGGGGAgaggaggggguggguGGGCGa -3'
miRNA:   3'- -UCUCUCU-UCUCuaCGCCCCCU---------------CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 41369 0.8 0.150911
Target:  5'- uGGAGGGGAGGGAaagGCGGuGGGAgagcGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa--CGCC-CCCU----CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 11802 0.8 0.15873
Target:  5'- gAGAGGGgcGGGGUG-GGGuGGGGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUACgCCC-CCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30025 0.8 0.162776
Target:  5'- aGGAGGGggGAGGagGgGGGGGAGGaGUGa -3'
miRNA:   3'- -UCUCUCuuCUCUa-CgCCCCCUCC-CGC- -5'
29494 3' -58.5 NC_006151.1 + 71553 0.8 0.162776
Target:  5'- cGAGGGAGGGGGggGCgaGGGGGAcGGGCGg -3'
miRNA:   3'- uCUCUCUUCUCUa-CG--CCCCCU-CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 10389 0.79 0.184421
Target:  5'- cGGGGGGAAGGGAggGgGGGGGAGaGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa-CgCCCCCUCcCGC- -5'
29494 3' -58.5 NC_006151.1 + 44297 0.78 0.198597
Target:  5'- aGGGGGGAacGGGGAUGCGaaGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCU--UCUCUACGC--CCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 29788 0.78 0.20353
Target:  5'- gAGAGAGAGGAGA-GgGaGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUCUaCgC-CCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 80065 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80125 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80095 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80185 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80155 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.