miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 80215 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 43334 0.77 0.218969
Target:  5'- cGGAGAGGaaagaGGAGAaGCGGGaGGGGGGgGg -3'
miRNA:   3'- -UCUCUCU-----UCUCUaCGCCC-CCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 93425 0.77 0.218969
Target:  5'- gAGAGAGAGGAGGaggggggcgaGCGGGGGucgccgccgcGGGGCGc -3'
miRNA:   3'- -UCUCUCUUCUCUa---------CGCCCCC----------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 44778 0.77 0.223792
Target:  5'- cGGAGAGAgcggGGAGAaGCGGGGGgugaaagGGGGUGc -3'
miRNA:   3'- -UCUCUCU----UCUCUaCGCCCCC-------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80245 0.77 0.224333
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGa -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8109 0.77 0.246915
Target:  5'- gGGAGGGggGGGGUcggagcGCGGaccccgcccgguGGGGGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUA------CGCC------------CCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16727 0.76 0.252847
Target:  5'- cGGGGGGggGGGAaGgGGGGGAaGGGgGg -3'
miRNA:   3'- -UCUCUCuuCUCUaCgCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 10360 0.76 0.265062
Target:  5'- gGGAGGGGAGGGGaGgGaGGGGAGGGgGu -3'
miRNA:   3'- -UCUCUCUUCUCUaCgC-CCCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 72589 0.76 0.271347
Target:  5'- -cAGAGucGGGGUGaGGGGGGGGGCa -3'
miRNA:   3'- ucUCUCuuCUCUACgCCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 33238 0.75 0.29092
Target:  5'- cGGGcGGGAGGGGGUcCGGGGGAaGGGUGg -3'
miRNA:   3'- -UCU-CUCUUCUCUAcGCCCCCU-CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 87785 0.75 0.297686
Target:  5'- gGGAGAGAgugugggugGGAGAggGUGGGaGAGGGCGc -3'
miRNA:   3'- -UCUCUCU---------UCUCUa-CGCCCcCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 31661 0.75 0.318712
Target:  5'- gGGAGGGAGGAGG-GCGGaGGaAGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCC-CCcUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 43928 0.74 0.348452
Target:  5'- gAGAGAGGAGGGAga-GGGGccGGGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCUacgCCCC--CUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 8043 0.74 0.348452
Target:  5'- gGGAGAGAGGgAGuUG-GGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUC-UCuACgCCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 41917 0.74 0.35619
Target:  5'- aGGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 33173 0.74 0.35619
Target:  5'- cGGGGAGGaagGGAGGUGUGGGGGGauGGCc -3'
miRNA:   3'- -UCUCUCU---UCUCUACGCCCCCUc-CCGc -5'
29494 3' -58.5 NC_006151.1 + 42005 0.74 0.364047
Target:  5'- uAGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 41961 0.74 0.364047
Target:  5'- uAGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 130935 0.74 0.364047
Target:  5'- cGGGGGcGGGGGcgGCGGGGGGucgcgcGGGCGc -3'
miRNA:   3'- uCUCUC-UUCUCuaCGCCCCCU------CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 44336 0.74 0.364047
Target:  5'- aGGAGAGGAGGGccGCGGacGGGuGGGaCGg -3'
miRNA:   3'- -UCUCUCUUCUCuaCGCC--CCCuCCC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.