miRNA display CGI


Results 21 - 40 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 11802 0.8 0.15873
Target:  5'- gAGAGGGgcGGGGUG-GGGuGGGGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUACgCCC-CCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 12322 0.7 0.543703
Target:  5'- aGGAGAGAuGGAugGAUGgauUGGGGGAaggagGGGCGg -3'
miRNA:   3'- -UCUCUCU-UCU--CUAC---GCCCCCU-----CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 12388 0.69 0.613724
Target:  5'- aGGAGAGAGcGAGA-GCGGGaacuGGAGaGGgGg -3'
miRNA:   3'- -UCUCUCUU-CUCUaCGCCC----CCUC-CCgC- -5'
29494 3' -58.5 NC_006151.1 + 14495 0.72 0.458036
Target:  5'- gGGGGucGGGAGGGAU-CGGGGGAaGGGgGg -3'
miRNA:   3'- -UCUC--UCUUCUCUAcGCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 15796 0.67 0.762359
Target:  5'- cGAG-GAAGGGGagGaCGGGGGGGaagacGGCGa -3'
miRNA:   3'- uCUCuCUUCUCUa-C-GCCCCCUC-----CCGC- -5'
29494 3' -58.5 NC_006151.1 + 16108 0.67 0.714169
Target:  5'- uGGGGAaGGGAGAUGgGGGuGGAGacGGUGn -3'
miRNA:   3'- -UCUCUcUUCUCUACgCCC-CCUC--CCGC- -5'
29494 3' -58.5 NC_006151.1 + 16138 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16173 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16208 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16243 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16278 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16313 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16348 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16383 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16418 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16453 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16488 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16592 0.68 0.664268
Target:  5'- uGGGGGggGAGuc-CGGGGGAguccGGGgGa -3'
miRNA:   3'- uCUCUCuuCUCuacGCCCCCU----CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 16656 0.69 0.603625
Target:  5'- gGGGGAGuccGGGGGAgucCGGGGGAGuccucGGCGg -3'
miRNA:   3'- -UCUCUC---UUCUCUac-GCCCCCUC-----CCGC- -5'
29494 3' -58.5 NC_006151.1 + 16727 0.76 0.252847
Target:  5'- cGGGGGGggGGGAaGgGGGGGAaGGGgGg -3'
miRNA:   3'- -UCUCUCuuCUCUaCgCCCCCU-CCCgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.