miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 32 0.69 0.633954
Target:  5'- aAGGGGGcGGGGcuuaaaGGGGGGGGGCu -3'
miRNA:   3'- -UCUCUCuUCUCuacg--CCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 1621 0.67 0.74336
Target:  5'- aGGAgGAGAAGGGGacCGGGGGAccGCGg -3'
miRNA:   3'- -UCU-CUCUUCUCUacGCCCCCUccCGC- -5'
29494 3' -58.5 NC_006151.1 + 1784 0.67 0.752912
Target:  5'- aGGAGAgGAGGAGGgccaccggGCcGGGGAGgcaGGCGc -3'
miRNA:   3'- -UCUCU-CUUCUCUa-------CGcCCCCUC---CCGC- -5'
29494 3' -58.5 NC_006151.1 + 1933 0.67 0.714169
Target:  5'- cGAGGGGAGAGAaGaCGGaGGaGaAGGGCc -3'
miRNA:   3'- uCUCUCUUCUCUaC-GCC-CC-C-UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 4976 0.66 0.798934
Target:  5'- cGAGAGGugguuguuguGGAGcgGCGcuuccugcgcGGGGGccGGGCGg -3'
miRNA:   3'- uCUCUCU----------UCUCuaCGC----------CCCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 5826 0.69 0.633954
Target:  5'- gAGAGccGGAGGAGGagGCcGGGGAGGcuGCGg -3'
miRNA:   3'- -UCUC--UCUUCUCUa-CGcCCCCUCC--CGC- -5'
29494 3' -58.5 NC_006151.1 + 8043 0.74 0.348452
Target:  5'- gGGAGAGAGGgAGuUG-GGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUC-UCuACgCCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 8109 0.77 0.246915
Target:  5'- gGGAGGGggGGGGUcggagcGCGGaccccgcccgguGGGGGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUA------CGCC------------CCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8210 0.69 0.638001
Target:  5'- gGGAGAcGAAGAGG-GCcggguccccuucccgGcGGGGAGGGCc -3'
miRNA:   3'- -UCUCU-CUUCUCUaCG---------------C-CCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 8469 0.66 0.775395
Target:  5'- cGGGAGGAcGGAUggucggucggacgggGCGggcGGGGAGGGUGu -3'
miRNA:   3'- uCUCUCUUcUCUA---------------CGC---CCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8532 0.71 0.485852
Target:  5'- cGGGGAGAGuGuGAUGUGGGGGGuGuGCGa -3'
miRNA:   3'- -UCUCUCUU-CuCUACGCCCCCUcC-CGC- -5'
29494 3' -58.5 NC_006151.1 + 8559 0.69 0.633954
Target:  5'- nGAGAG-AGAGcGUGCGuGuGGGuGGGUGg -3'
miRNA:   3'- uCUCUCuUCUC-UACGC-C-CCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8603 0.66 0.80773
Target:  5'- cGAGuauGggGGccGGUGCGGGuGuGAGGGUc -3'
miRNA:   3'- uCUCu--CuuCU--CUACGCCC-C-CUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 9503 0.67 0.752912
Target:  5'- gGGAGAGcGGGGcGUGUGGGGaaggaaGAGGGg- -3'
miRNA:   3'- -UCUCUCuUCUC-UACGCCCC------CUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 9538 0.66 0.798046
Target:  5'- gGGGGGGAaagaagaagaaacGGGGAaGCGGGGGAaGGa- -3'
miRNA:   3'- -UCUCUCU-------------UCUCUaCGCCCCCUcCCgc -5'
29494 3' -58.5 NC_006151.1 + 9627 0.72 0.458036
Target:  5'- cGGcGAGggGGGAaGCGGgaGGGAGaGGCGc -3'
miRNA:   3'- -UCuCUCuuCUCUaCGCC--CCCUC-CCGC- -5'
29494 3' -58.5 NC_006151.1 + 10093 0.67 0.752912
Target:  5'- cGGAG-GAAGgcGGGUGCGGaGGAGGaaGCGc -3'
miRNA:   3'- -UCUCuCUUC--UCUACGCCcCCUCC--CGC- -5'
29494 3' -58.5 NC_006151.1 + 10360 0.76 0.265062
Target:  5'- gGGAGGGGAGGGGaGgGaGGGGAGGGgGu -3'
miRNA:   3'- -UCUCUCUUCUCUaCgC-CCCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 10389 0.79 0.184421
Target:  5'- cGGGGGGAAGGGAggGgGGGGGAGaGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa-CgCCCCCUCcCGC- -5'
29494 3' -58.5 NC_006151.1 + 11725 0.81 0.139838
Target:  5'- cGAGAGggGGGA-GCGGGGGugAGGGgGa -3'
miRNA:   3'- uCUCUCuuCUCUaCGCCCCC--UCCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.