miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 142546 0.67 0.714169
Target:  5'- aGGGGGGAAcGAGGggGUugGGGGGAaGGCGc -3'
miRNA:   3'- -UCUCUCUU-CUCUa-CG--CCCCCUcCCGC- -5'
29494 3' -58.5 NC_006151.1 + 142470 0.66 0.780908
Target:  5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3'
miRNA:   3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 142418 0.66 0.780908
Target:  5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3'
miRNA:   3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 142366 0.66 0.780908
Target:  5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3'
miRNA:   3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 137598 0.67 0.733713
Target:  5'- -cGGGGucGGGAU-CGGGGGcgcGGGCGg -3'
miRNA:   3'- ucUCUCuuCUCUAcGCCCCCu--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 135085 0.67 0.752912
Target:  5'- --cGGGcGGGGGcgGCGGGGccGGGCGg -3'
miRNA:   3'- ucuCUC-UUCUCuaCGCCCCcuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 133613 0.66 0.780908
Target:  5'- cGAGGGGcgucuGGGGGUcGCGGcGGccGGGGCGg -3'
miRNA:   3'- uCUCUCU-----UCUCUA-CGCCcCC--UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 131717 0.67 0.72398
Target:  5'- cGGGGGAuGAGGUgguagGCGGGGuGGcGGGCc -3'
miRNA:   3'- uCUCUCUuCUCUA-----CGCCCC-CU-CCCGc -5'
29494 3' -58.5 NC_006151.1 + 130935 0.74 0.364047
Target:  5'- cGGGGGcGGGGGcgGCGGGGGGucgcgcGGGCGc -3'
miRNA:   3'- uCUCUC-UUCUCuaCGCCCCCU------CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 121553 0.72 0.448953
Target:  5'- aGGGGAgGAGGAGggGaaGGGGAcGGGCGc -3'
miRNA:   3'- -UCUCU-CUUCUCuaCgcCCCCU-CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 110370 0.7 0.563507
Target:  5'- uGGAGGuGggGAGAU-CGGGGGgaauuGGGGgGa -3'
miRNA:   3'- -UCUCU-CuuCUCUAcGCCCCC-----UCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 93425 0.77 0.218969
Target:  5'- gAGAGAGAGGAGGaggggggcgaGCGGGGGucgccgccgcGGGGCGc -3'
miRNA:   3'- -UCUCUCUUCUCUa---------CGCCCCC----------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 89167 0.71 0.485852
Target:  5'- cGGGcGAGGcGGgcGCGGGGGucgGGGGCGg -3'
miRNA:   3'- uCUCuCUUC-UCuaCGCCCCC---UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 89120 0.68 0.684364
Target:  5'- cGAGAccGAGGGcgGCGGGaccGGGGGCGu -3'
miRNA:   3'- uCUCUc-UUCUCuaCGCCCc--CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 87785 0.75 0.297686
Target:  5'- gGGAGAGAgugugggugGGAGAggGUGGGaGAGGGCGc -3'
miRNA:   3'- -UCUCUCU---------UCUCUa-CGCCCcCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80437 0.68 0.693356
Target:  5'- gGGAGAGAgugguguauacucGGGGAa-CGGGGGAaGGGgGa -3'
miRNA:   3'- -UCUCUCU-------------UCUCUacGCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 80325 0.73 0.388332
Target:  5'- aGGAGuuuuGggGGGAc-CGGGGcGAGGGCGg -3'
miRNA:   3'- -UCUCu---CuuCUCUacGCCCC-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80245 0.77 0.224333
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGa -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80215 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80185 0.78 0.213714
Target:  5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.