Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29494 | 3' | -58.5 | NC_006151.1 | + | 1621 | 0.67 | 0.74336 |
Target: 5'- aGGAgGAGAAGGGGacCGGGGGAccGCGg -3' miRNA: 3'- -UCU-CUCUUCUCUacGCCCCCUccCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 40845 | 0.67 | 0.74336 |
Target: 5'- uGGAGGGucuugguGGGGGUGaCGGGGGuccuccuccuggAGGGUc -3' miRNA: 3'- -UCUCUCu------UCUCUAC-GCCCCC------------UCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30965 | 0.67 | 0.74336 |
Target: 5'- ---cGGGAGAGcggGCGGGGGAcgGGGaCGg -3' miRNA: 3'- ucucUCUUCUCua-CGCCCCCU--CCC-GC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 137598 | 0.67 | 0.733713 |
Target: 5'- -cGGGGucGGGAU-CGGGGGcgcGGGCGg -3' miRNA: 3'- ucUCUCuuCUCUAcGCCCCCu--CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 45595 | 0.67 | 0.733713 |
Target: 5'- aGGGGGcGggGGGAgccccgacgggGCGGGcGGAaggGGGCGu -3' miRNA: 3'- -UCUCU-CuuCUCUa----------CGCCC-CCU---CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30844 | 0.67 | 0.724957 |
Target: 5'- cGGAGAGGAGcgaGGAggacuggcggcggcgGCGGaGGAGGGgGg -3' miRNA: 3'- -UCUCUCUUC---UCUa--------------CGCCcCCUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 131717 | 0.67 | 0.72398 |
Target: 5'- cGGGGGAuGAGGUgguagGCGGGGuGGcGGGCc -3' miRNA: 3'- uCUCUCUuCUCUA-----CGCCCC-CU-CCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 1933 | 0.67 | 0.714169 |
Target: 5'- cGAGGGGAGAGAaGaCGGaGGaGaAGGGCc -3' miRNA: 3'- uCUCUCUUCUCUaC-GCC-CC-C-UCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 142546 | 0.67 | 0.714169 |
Target: 5'- aGGGGGGAAcGAGGggGUugGGGGGAaGGCGc -3' miRNA: 3'- -UCUCUCUU-CUCUa-CG--CCCCCUcCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 43893 | 0.67 | 0.714169 |
Target: 5'- cGAGucggcgcGGAGAGggGUaGGGGAGGGgGg -3' miRNA: 3'- uCUCu------CUUCUCuaCGcCCCCUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16108 | 0.67 | 0.714169 |
Target: 5'- uGGGGAaGGGAGAUGgGGGuGGAGacGGUGn -3' miRNA: 3'- -UCUCUcUUCUCUACgCCC-CCUC--CCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 26206 | 0.68 | 0.70825 |
Target: 5'- gAGAGAGuuGAGGUucgaGCGGcGGGccgccguguuuauugAGGGCa -3' miRNA: 3'- -UCUCUCuuCUCUA----CGCC-CCC---------------UCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 33402 | 0.68 | 0.701315 |
Target: 5'- cAGAGGcGGAGAGG-GCGagcgagacacgcacGGGGAGaGGCGc -3' miRNA: 3'- -UCUCU-CUUCUCUaCGC--------------CCCCUC-CCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 32828 | 0.68 | 0.694353 |
Target: 5'- aAGAGAGAgAGAGAaagagGGGGGccGGCGg -3' miRNA: 3'- -UCUCUCU-UCUCUacg--CCCCCucCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30329 | 0.68 | 0.694353 |
Target: 5'- aAGAuGAGGAG-GcgGCGGcGGcgcGAGGGCGc -3' miRNA: 3'- -UCU-CUCUUCuCuaCGCC-CC---CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80437 | 0.68 | 0.693356 |
Target: 5'- gGGAGAGAgugguguauacucGGGGAa-CGGGGGAaGGGgGa -3' miRNA: 3'- -UCUCUCU-------------UCUCUacGCCCCCU-CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 89120 | 0.68 | 0.684364 |
Target: 5'- cGAGAccGAGGGcgGCGGGaccGGGGGCGu -3' miRNA: 3'- uCUCUc-UUCUCuaCGCCCc--CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 46041 | 0.68 | 0.674333 |
Target: 5'- cGGGGaAGAGGAuGAgccgGUaGGGGGGGGCu -3' miRNA: 3'- -UCUC-UCUUCU-CUa---CGcCCCCUCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16592 | 0.68 | 0.664268 |
Target: 5'- uGGGGGggGAGuc-CGGGGGAguccGGGgGa -3' miRNA: 3'- uCUCUCuuCUCuacGCCCCCU----CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 33460 | 0.68 | 0.654178 |
Target: 5'- gAGAGAGAGGAGAgGCGagagaGGaGGAGaaggaggaGGCGa -3' miRNA: 3'- -UCUCUCUUCUCUaCGC-----CC-CCUC--------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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