Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29496 | 3' | -55.8 | NC_006151.1 | + | 35057 | 1.11 | 0.002085 |
Target: 5'- uCUGAUUGGCUCGCUAGCACCACGGGGg -3' miRNA: 3'- -GACUAACCGAGCGAUCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 19089 | 0.77 | 0.321992 |
Target: 5'- -aGAUgcagGGCUCGUacacguaguacagcaGGCACCGCGGGGg -3' miRNA: 3'- gaCUAa---CCGAGCGa--------------UCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 43687 | 0.75 | 0.454413 |
Target: 5'- -cGAggGGCcCGCcGGCGCgACGGGGa -3' miRNA: 3'- gaCUaaCCGaGCGaUCGUGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 100035 | 0.74 | 0.47308 |
Target: 5'- -cGAggcGCUCGCgcacgAGCugCACGGGGu -3' miRNA: 3'- gaCUaacCGAGCGa----UCGugGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 20131 | 0.74 | 0.482558 |
Target: 5'- gCUGGggGGCg----GGCGCCGCGGGGg -3' miRNA: 3'- -GACUaaCCGagcgaUCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 127354 | 0.72 | 0.57138 |
Target: 5'- gUGGUcGGuCUCGCccugGGCggggACCGCGGGGg -3' miRNA: 3'- gACUAaCC-GAGCGa---UCG----UGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 45436 | 0.72 | 0.57138 |
Target: 5'- -gGGUUcgcgGGCgUCGCacGCACCGCGGGGc -3' miRNA: 3'- gaCUAA----CCG-AGCGauCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 82608 | 0.72 | 0.601976 |
Target: 5'- -gGGUgGGCccgCGCgcgGGCGCCGCGGuGGg -3' miRNA: 3'- gaCUAaCCGa--GCGa--UCGUGGUGCC-CC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 47244 | 0.72 | 0.622497 |
Target: 5'- gCUGGUUGGCUgGCUGGCGagAUGGa- -3' miRNA: 3'- -GACUAACCGAgCGAUCGUggUGCCcc -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 67871 | 0.71 | 0.643048 |
Target: 5'- -cGAggUGGCgcgCGCgccAGC-CCGCGGGGc -3' miRNA: 3'- gaCUa-ACCGa--GCGa--UCGuGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 66523 | 0.71 | 0.652288 |
Target: 5'- -----gGGCUCGCgcGCGCCGCgcucuucGGGGg -3' miRNA: 3'- gacuaaCCGAGCGauCGUGGUG-------CCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 136405 | 0.7 | 0.694123 |
Target: 5'- cCUGAgcGGCUaCGCgcggGGCcCCGCGGcGGc -3' miRNA: 3'- -GACUaaCCGA-GCGa---UCGuGGUGCC-CC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 59651 | 0.7 | 0.694123 |
Target: 5'- -aGAcgcGCUCGCUgcgcAGCGCCuCGGGGa -3' miRNA: 3'- gaCUaacCGAGCGA----UCGUGGuGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 36567 | 0.7 | 0.704217 |
Target: 5'- -cGG-UGGCcgcagCGCcGGCACgGCGGGGg -3' miRNA: 3'- gaCUaACCGa----GCGaUCGUGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 29417 | 0.7 | 0.71425 |
Target: 5'- -gGAgaaGGCUCGgUGugGCCGCGGGGg -3' miRNA: 3'- gaCUaa-CCGAGCgAUcgUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 33018 | 0.69 | 0.763168 |
Target: 5'- gCUG-UUGGC-CGUUGGCcgaggACgACGGGGa -3' miRNA: 3'- -GACuAACCGaGCGAUCG-----UGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 54133 | 0.69 | 0.78198 |
Target: 5'- -gGAcgGGCUCuGCcccggcGGCGCCGCGGaGGa -3' miRNA: 3'- gaCUaaCCGAG-CGa-----UCGUGGUGCC-CC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 28582 | 0.68 | 0.787521 |
Target: 5'- -cGcAUUGGCcggCGCguccccggaggcgGGUGCCGCGGGGu -3' miRNA: 3'- gaC-UAACCGa--GCGa------------UCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 21311 | 0.68 | 0.791187 |
Target: 5'- -cGAgcggUGGCgcgagaCGCccGGCGCgGCGGGGg -3' miRNA: 3'- gaCUa---ACCGa-----GCGa-UCGUGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 141624 | 0.68 | 0.791187 |
Target: 5'- -gGAUcgGGCgggUCGCUgccgcggcGGCGCgGCGGGGc -3' miRNA: 3'- gaCUAa-CCG---AGCGA--------UCGUGgUGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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