miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 3' -55.8 NC_006151.1 + 28865 0.68 0.805615
Target:  5'- --cAUUGGCcggCGCguccccggaggcgGGUGCCGCGGGGu -3'
miRNA:   3'- gacUAACCGa--GCGa------------UCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 24440 0.68 0.80916
Target:  5'- -cGAccUUGGUgucguagcggUCGCgcgcgAGCACCuCGGGGg -3'
miRNA:   3'- gaCU--AACCG----------AGCGa----UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 19442 0.68 0.80916
Target:  5'- aUGGgcGGCUCGCgcuggagccgcGGCACCuCGGGcGg -3'
miRNA:   3'- gACUaaCCGAGCGa----------UCGUGGuGCCC-C- -5'
29496 3' -55.8 NC_006151.1 + 38618 0.68 0.834884
Target:  5'- -cGAggGGCUCuccgGCgcGGCccuCCGCGGGGa -3'
miRNA:   3'- gaCUaaCCGAG----CGa-UCGu--GGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 96251 0.68 0.834884
Target:  5'- aCUGGUccaUGGcCUCGC-AGCGCCcgugcucgagGCGGGc -3'
miRNA:   3'- -GACUA---ACC-GAGCGaUCGUGG----------UGCCCc -5'
29496 3' -55.8 NC_006151.1 + 88540 0.68 0.834884
Target:  5'- -----aGGCgcaCGCU-GCGCCGCGGGu -3'
miRNA:   3'- gacuaaCCGa--GCGAuCGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 122924 0.67 0.839835
Target:  5'- -aGGgcGGCgacgaCGCggacgccgacggcGGCGCCGCGGGGg -3'
miRNA:   3'- gaCUaaCCGa----GCGa------------UCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 35388 0.67 0.850324
Target:  5'- --cAUUGGC-CGUcgauggggcaagaUGGcCGCCGCGGGGg -3'
miRNA:   3'- gacUAACCGaGCG-------------AUC-GUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 73218 0.67 0.858938
Target:  5'- -----aGGCcCGCgGGCACCugGGGc -3'
miRNA:   3'- gacuaaCCGaGCGaUCGUGGugCCCc -5'
29496 3' -55.8 NC_006151.1 + 61187 0.67 0.858938
Target:  5'- ----gUGGC-CGCcAGCGCCGCGGa- -3'
miRNA:   3'- gacuaACCGaGCGaUCGUGGUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 124675 0.67 0.866551
Target:  5'- -----cGGCcugCGCgagggGGC-CCACGGGGa -3'
miRNA:   3'- gacuaaCCGa--GCGa----UCGuGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 90993 0.67 0.866551
Target:  5'- gCUGGcUGGCgCGCUccAGCACgGCGGu- -3'
miRNA:   3'- -GACUaACCGaGCGA--UCGUGgUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 73610 0.67 0.866551
Target:  5'- ----cUGGCgccgcaGCUGGUgggugaagGCCACGGGGc -3'
miRNA:   3'- gacuaACCGag----CGAUCG--------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 55470 0.67 0.866551
Target:  5'- -cGGggGGCgcgCGCccGGCGCCGCGGa- -3'
miRNA:   3'- gaCUaaCCGa--GCGa-UCGUGGUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 20449 0.67 0.873952
Target:  5'- -gGAgcggGGCUCGggggUGGCGCCGguccccCGGGGg -3'
miRNA:   3'- gaCUaa--CCGAGCg---AUCGUGGU------GCCCC- -5'
29496 3' -55.8 NC_006151.1 + 78305 0.67 0.879003
Target:  5'- gCUGGagGGCaUGCUcgacaggcuggacgAGCGCCcCGGGGc -3'
miRNA:   3'- -GACUaaCCGaGCGA--------------UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 42644 0.67 0.881134
Target:  5'- -----cGGUUUGuCUGGCcgggcauccccGCCGCGGGGa -3'
miRNA:   3'- gacuaaCCGAGC-GAUCG-----------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 123806 0.66 0.88603
Target:  5'- gCUGGccucggacgucuUUGGCcUGCUccacaccacgcugcAGCugCGCGGGGc -3'
miRNA:   3'- -GACU------------AACCGaGCGA--------------UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 45744 0.66 0.888094
Target:  5'- -----aGGCUUcC-AGCGCCugGGGGa -3'
miRNA:   3'- gacuaaCCGAGcGaUCGUGGugCCCC- -5'
29496 3' -55.8 NC_006151.1 + 73035 0.66 0.888094
Target:  5'- -gGAUUGGCgguggCGCggugggGGUG-CGCGGGGu -3'
miRNA:   3'- gaCUAACCGa----GCGa-----UCGUgGUGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.