miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 3' -55.8 NC_006151.1 + 53241 0.66 0.894826
Target:  5'- gUGAgcaGGUucUCGCUGGCGCgCACGcGGc -3'
miRNA:   3'- gACUaa-CCG--AGCGAUCGUG-GUGC-CCc -5'
29496 3' -55.8 NC_006151.1 + 54133 0.69 0.78198
Target:  5'- -gGAcgGGCUCuGCcccggcGGCGCCGCGGaGGa -3'
miRNA:   3'- gaCUaaCCGAG-CGa-----UCGUGGUGCC-CC- -5'
29496 3' -55.8 NC_006151.1 + 55470 0.67 0.866551
Target:  5'- -cGGggGGCgcgCGCccGGCGCCGCGGa- -3'
miRNA:   3'- gaCUaaCCGa--GCGa-UCGUGGUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 59651 0.7 0.694123
Target:  5'- -aGAcgcGCUCGCUgcgcAGCGCCuCGGGGa -3'
miRNA:   3'- gaCUaacCGAGCGA----UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 61187 0.67 0.858938
Target:  5'- ----gUGGC-CGCcAGCGCCGCGGa- -3'
miRNA:   3'- gacuaACCGaGCGaUCGUGGUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 66523 0.71 0.652288
Target:  5'- -----gGGCUCGCgcGCGCCGCgcucuucGGGGg -3'
miRNA:   3'- gacuaaCCGAGCGauCGUGGUG-------CCCC- -5'
29496 3' -55.8 NC_006151.1 + 67871 0.71 0.643048
Target:  5'- -cGAggUGGCgcgCGCgccAGC-CCGCGGGGc -3'
miRNA:   3'- gaCUa-ACCGa--GCGa--UCGuGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 72812 0.66 0.894826
Target:  5'- -cGAcgaGCUCGCcGGCGCCcACGGGc -3'
miRNA:   3'- gaCUaacCGAGCGaUCGUGG-UGCCCc -5'
29496 3' -55.8 NC_006151.1 + 73035 0.66 0.888094
Target:  5'- -gGAUUGGCgguggCGCggugggGGUG-CGCGGGGu -3'
miRNA:   3'- gaCUAACCGa----GCGa-----UCGUgGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 73218 0.67 0.858938
Target:  5'- -----aGGCcCGCgGGCACCugGGGc -3'
miRNA:   3'- gacuaaCCGaGCGaUCGUGGugCCCc -5'
29496 3' -55.8 NC_006151.1 + 73610 0.67 0.866551
Target:  5'- ----cUGGCgccgcaGCUGGUgggugaagGCCACGGGGc -3'
miRNA:   3'- gacuaACCGag----CGAUCG--------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 78305 0.67 0.879003
Target:  5'- gCUGGagGGCaUGCUcgacaggcuggacgAGCGCCcCGGGGc -3'
miRNA:   3'- -GACUaaCCGaGCGA--------------UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 82608 0.72 0.601976
Target:  5'- -gGGUgGGCccgCGCgcgGGCGCCGCGGuGGg -3'
miRNA:   3'- gaCUAaCCGa--GCGa--UCGUGGUGCC-CC- -5'
29496 3' -55.8 NC_006151.1 + 88540 0.68 0.834884
Target:  5'- -----aGGCgcaCGCU-GCGCCGCGGGu -3'
miRNA:   3'- gacuaaCCGa--GCGAuCGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 90993 0.67 0.866551
Target:  5'- gCUGGcUGGCgCGCUccAGCACgGCGGu- -3'
miRNA:   3'- -GACUaACCGaGCGA--UCGUGgUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 92811 0.66 0.900687
Target:  5'- gUGAcaaggucuUUGGCUCGCUgcugcGGCACgugaagaacgagaCGCGGGc -3'
miRNA:   3'- gACU--------AACCGAGCGA-----UCGUG-------------GUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 93438 0.66 0.913621
Target:  5'- -aGGggGGCgagCGggGGUcgccGCCGCGGGGc -3'
miRNA:   3'- gaCUaaCCGa--GCgaUCG----UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 96251 0.68 0.834884
Target:  5'- aCUGGUccaUGGcCUCGC-AGCGCCcgugcucgagGCGGGc -3'
miRNA:   3'- -GACUA---ACC-GAGCGaUCGUGG----------UGCCCc -5'
29496 3' -55.8 NC_006151.1 + 100035 0.74 0.47308
Target:  5'- -cGAggcGCUCGCgcacgAGCugCACGGGGu -3'
miRNA:   3'- gaCUaacCGAGCGa----UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 116320 0.66 0.911837
Target:  5'- aUGAcgccGcGCUCGCgcgggcccgcggcgUAGUACCGCGGGa -3'
miRNA:   3'- gACUaa--C-CGAGCG--------------AUCGUGGUGCCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.