miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 3' -55.8 NC_006151.1 + 19089 0.77 0.321992
Target:  5'- -aGAUgcagGGCUCGUacacguaguacagcaGGCACCGCGGGGg -3'
miRNA:   3'- gaCUAa---CCGAGCGa--------------UCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 19270 0.66 0.913621
Target:  5'- -----gGGCUCG-UGGCG-CGCGGGGc -3'
miRNA:   3'- gacuaaCCGAGCgAUCGUgGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 19442 0.68 0.80916
Target:  5'- aUGGgcGGCUCGCgcuggagccgcGGCACCuCGGGcGg -3'
miRNA:   3'- gACUaaCCGAGCGa----------UCGUGGuGCCC-C- -5'
29496 3' -55.8 NC_006151.1 + 20131 0.74 0.482558
Target:  5'- gCUGGggGGCg----GGCGCCGCGGGGg -3'
miRNA:   3'- -GACUaaCCGagcgaUCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 20449 0.67 0.873952
Target:  5'- -gGAgcggGGCUCGggggUGGCGCCGguccccCGGGGg -3'
miRNA:   3'- gaCUaa--CCGAGCg---AUCGUGGU------GCCCC- -5'
29496 3' -55.8 NC_006151.1 + 21311 0.68 0.791187
Target:  5'- -cGAgcggUGGCgcgagaCGCccGGCGCgGCGGGGg -3'
miRNA:   3'- gaCUa---ACCGa-----GCGa-UCGUGgUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 24440 0.68 0.80916
Target:  5'- -cGAccUUGGUgucguagcggUCGCgcgcgAGCACCuCGGGGg -3'
miRNA:   3'- gaCU--AACCG----------AGCGa----UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 28582 0.68 0.787521
Target:  5'- -cGcAUUGGCcggCGCguccccggaggcgGGUGCCGCGGGGu -3'
miRNA:   3'- gaC-UAACCGa--GCGa------------UCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 28865 0.68 0.805615
Target:  5'- --cAUUGGCcggCGCguccccggaggcgGGUGCCGCGGGGu -3'
miRNA:   3'- gacUAACCGa--GCGa------------UCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 29417 0.7 0.71425
Target:  5'- -gGAgaaGGCUCGgUGugGCCGCGGGGg -3'
miRNA:   3'- gaCUaa-CCGAGCgAUcgUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 33018 0.69 0.763168
Target:  5'- gCUG-UUGGC-CGUUGGCcgaggACgACGGGGa -3'
miRNA:   3'- -GACuAACCGaGCGAUCG-----UGgUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 35057 1.11 0.002085
Target:  5'- uCUGAUUGGCUCGCUAGCACCACGGGGg -3'
miRNA:   3'- -GACUAACCGAGCGAUCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 35388 0.67 0.850324
Target:  5'- --cAUUGGC-CGUcgauggggcaagaUGGcCGCCGCGGGGg -3'
miRNA:   3'- gacUAACCGaGCG-------------AUC-GUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 36567 0.7 0.704217
Target:  5'- -cGG-UGGCcgcagCGCcGGCACgGCGGGGg -3'
miRNA:   3'- gaCUaACCGa----GCGaUCGUGgUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 38618 0.68 0.834884
Target:  5'- -cGAggGGCUCuccgGCgcGGCccuCCGCGGGGa -3'
miRNA:   3'- gaCUaaCCGAG----CGa-UCGu--GGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 42644 0.67 0.881134
Target:  5'- -----cGGUUUGuCUGGCcgggcauccccGCCGCGGGGa -3'
miRNA:   3'- gacuaaCCGAGC-GAUCG-----------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 43687 0.75 0.454413
Target:  5'- -cGAggGGCcCGCcGGCGCgACGGGGa -3'
miRNA:   3'- gaCUaaCCGaGCGaUCGUGgUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 45436 0.72 0.57138
Target:  5'- -gGGUUcgcgGGCgUCGCacGCACCGCGGGGc -3'
miRNA:   3'- gaCUAA----CCG-AGCGauCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 45744 0.66 0.888094
Target:  5'- -----aGGCUUcC-AGCGCCugGGGGa -3'
miRNA:   3'- gacuaaCCGAGcGaUCGUGGugCCCC- -5'
29496 3' -55.8 NC_006151.1 + 47244 0.72 0.622497
Target:  5'- gCUGGUUGGCUgGCUGGCGagAUGGa- -3'
miRNA:   3'- -GACUAACCGAgCGAUCGUggUGCCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.