miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 3' -55.8 NC_006151.1 + 141624 0.68 0.791187
Target:  5'- -gGAUcgGGCgggUCGCUgccgcggcGGCGCgGCGGGGc -3'
miRNA:   3'- gaCUAa-CCG---AGCGA--------UCGUGgUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 137411 0.66 0.888094
Target:  5'- -cGGggGGCgcccUCGCcgcCGCCGCGGGGu -3'
miRNA:   3'- gaCUaaCCG----AGCGaucGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 136405 0.7 0.694123
Target:  5'- cCUGAgcGGCUaCGCgcggGGCcCCGCGGcGGc -3'
miRNA:   3'- -GACUaaCCGA-GCGa---UCGuGGUGCC-CC- -5'
29496 3' -55.8 NC_006151.1 + 128052 0.66 0.907592
Target:  5'- -----cGGCggcaGCggcGGCugCGCGGGGg -3'
miRNA:   3'- gacuaaCCGag--CGa--UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 127354 0.72 0.57138
Target:  5'- gUGGUcGGuCUCGCccugGGCggggACCGCGGGGg -3'
miRNA:   3'- gACUAaCC-GAGCGa---UCG----UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 124675 0.67 0.866551
Target:  5'- -----cGGCcugCGCgagggGGC-CCACGGGGa -3'
miRNA:   3'- gacuaaCCGa--GCGa----UCGuGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 123806 0.66 0.88603
Target:  5'- gCUGGccucggacgucuUUGGCcUGCUccacaccacgcugcAGCugCGCGGGGc -3'
miRNA:   3'- -GACU------------AACCGaGCGA--------------UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 122924 0.67 0.839835
Target:  5'- -aGGgcGGCgacgaCGCggacgccgacggcGGCGCCGCGGGGg -3'
miRNA:   3'- gaCUaaCCGa----GCGa------------UCGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 122369 0.66 0.901326
Target:  5'- gUGcacgGGCUCGaCgaggcGCGCCGCGGGc -3'
miRNA:   3'- gACuaa-CCGAGC-Gau---CGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 116320 0.66 0.911837
Target:  5'- aUGAcgccGcGCUCGCgcgggcccgcggcgUAGUACCGCGGGa -3'
miRNA:   3'- gACUaa--C-CGAGCG--------------AUCGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 100035 0.74 0.47308
Target:  5'- -cGAggcGCUCGCgcacgAGCugCACGGGGu -3'
miRNA:   3'- gaCUaacCGAGCGa----UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 96251 0.68 0.834884
Target:  5'- aCUGGUccaUGGcCUCGC-AGCGCCcgugcucgagGCGGGc -3'
miRNA:   3'- -GACUA---ACC-GAGCGaUCGUGG----------UGCCCc -5'
29496 3' -55.8 NC_006151.1 + 93438 0.66 0.913621
Target:  5'- -aGGggGGCgagCGggGGUcgccGCCGCGGGGc -3'
miRNA:   3'- gaCUaaCCGa--GCgaUCG----UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 92811 0.66 0.900687
Target:  5'- gUGAcaaggucuUUGGCUCGCUgcugcGGCACgugaagaacgagaCGCGGGc -3'
miRNA:   3'- gACU--------AACCGAGCGA-----UCGUG-------------GUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 90993 0.67 0.866551
Target:  5'- gCUGGcUGGCgCGCUccAGCACgGCGGu- -3'
miRNA:   3'- -GACUaACCGaGCGA--UCGUGgUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 88540 0.68 0.834884
Target:  5'- -----aGGCgcaCGCU-GCGCCGCGGGu -3'
miRNA:   3'- gacuaaCCGa--GCGAuCGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 82608 0.72 0.601976
Target:  5'- -gGGUgGGCccgCGCgcgGGCGCCGCGGuGGg -3'
miRNA:   3'- gaCUAaCCGa--GCGa--UCGUGGUGCC-CC- -5'
29496 3' -55.8 NC_006151.1 + 78305 0.67 0.879003
Target:  5'- gCUGGagGGCaUGCUcgacaggcuggacgAGCGCCcCGGGGc -3'
miRNA:   3'- -GACUaaCCGaGCGA--------------UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 73610 0.67 0.866551
Target:  5'- ----cUGGCgccgcaGCUGGUgggugaagGCCACGGGGc -3'
miRNA:   3'- gacuaACCGag----CGAUCG--------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 73218 0.67 0.858938
Target:  5'- -----aGGCcCGCgGGCACCugGGGc -3'
miRNA:   3'- gacuaaCCGaGCGaUCGUGGugCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.