Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29496 | 3' | -55.8 | NC_006151.1 | + | 61187 | 0.67 | 0.858938 |
Target: 5'- ----gUGGC-CGCcAGCGCCGCGGa- -3' miRNA: 3'- gacuaACCGaGCGaUCGUGGUGCCcc -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 35388 | 0.67 | 0.850324 |
Target: 5'- --cAUUGGC-CGUcgauggggcaagaUGGcCGCCGCGGGGg -3' miRNA: 3'- gacUAACCGaGCG-------------AUC-GUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 122924 | 0.67 | 0.839835 |
Target: 5'- -aGGgcGGCgacgaCGCggacgccgacggcGGCGCCGCGGGGg -3' miRNA: 3'- gaCUaaCCGa----GCGa------------UCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 88540 | 0.68 | 0.834884 |
Target: 5'- -----aGGCgcaCGCU-GCGCCGCGGGu -3' miRNA: 3'- gacuaaCCGa--GCGAuCGUGGUGCCCc -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 96251 | 0.68 | 0.834884 |
Target: 5'- aCUGGUccaUGGcCUCGC-AGCGCCcgugcucgagGCGGGc -3' miRNA: 3'- -GACUA---ACC-GAGCGaUCGUGG----------UGCCCc -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 38618 | 0.68 | 0.834884 |
Target: 5'- -cGAggGGCUCuccgGCgcGGCccuCCGCGGGGa -3' miRNA: 3'- gaCUaaCCGAG----CGa-UCGu--GGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 19442 | 0.68 | 0.80916 |
Target: 5'- aUGGgcGGCUCGCgcuggagccgcGGCACCuCGGGcGg -3' miRNA: 3'- gACUaaCCGAGCGa----------UCGUGGuGCCC-C- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 24440 | 0.68 | 0.80916 |
Target: 5'- -cGAccUUGGUgucguagcggUCGCgcgcgAGCACCuCGGGGg -3' miRNA: 3'- gaCU--AACCG----------AGCGa----UCGUGGuGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 28865 | 0.68 | 0.805615 |
Target: 5'- --cAUUGGCcggCGCguccccggaggcgGGUGCCGCGGGGu -3' miRNA: 3'- gacUAACCGa--GCGa------------UCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 21311 | 0.68 | 0.791187 |
Target: 5'- -cGAgcggUGGCgcgagaCGCccGGCGCgGCGGGGg -3' miRNA: 3'- gaCUa---ACCGa-----GCGa-UCGUGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 141624 | 0.68 | 0.791187 |
Target: 5'- -gGAUcgGGCgggUCGCUgccgcggcGGCGCgGCGGGGc -3' miRNA: 3'- gaCUAa-CCG---AGCGA--------UCGUGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 28582 | 0.68 | 0.787521 |
Target: 5'- -cGcAUUGGCcggCGCguccccggaggcgGGUGCCGCGGGGu -3' miRNA: 3'- gaC-UAACCGa--GCGa------------UCGUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 54133 | 0.69 | 0.78198 |
Target: 5'- -gGAcgGGCUCuGCcccggcGGCGCCGCGGaGGa -3' miRNA: 3'- gaCUaaCCGAG-CGa-----UCGUGGUGCC-CC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 33018 | 0.69 | 0.763168 |
Target: 5'- gCUG-UUGGC-CGUUGGCcgaggACgACGGGGa -3' miRNA: 3'- -GACuAACCGaGCGAUCG-----UGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 29417 | 0.7 | 0.71425 |
Target: 5'- -gGAgaaGGCUCGgUGugGCCGCGGGGg -3' miRNA: 3'- gaCUaa-CCGAGCgAUcgUGGUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 36567 | 0.7 | 0.704217 |
Target: 5'- -cGG-UGGCcgcagCGCcGGCACgGCGGGGg -3' miRNA: 3'- gaCUaACCGa----GCGaUCGUGgUGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 136405 | 0.7 | 0.694123 |
Target: 5'- cCUGAgcGGCUaCGCgcggGGCcCCGCGGcGGc -3' miRNA: 3'- -GACUaaCCGA-GCGa---UCGuGGUGCC-CC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 59651 | 0.7 | 0.694123 |
Target: 5'- -aGAcgcGCUCGCUgcgcAGCGCCuCGGGGa -3' miRNA: 3'- gaCUaacCGAGCGA----UCGUGGuGCCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 66523 | 0.71 | 0.652288 |
Target: 5'- -----gGGCUCGCgcGCGCCGCgcucuucGGGGg -3' miRNA: 3'- gacuaaCCGAGCGauCGUGGUG-------CCCC- -5' |
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29496 | 3' | -55.8 | NC_006151.1 | + | 67871 | 0.71 | 0.643048 |
Target: 5'- -cGAggUGGCgcgCGCgccAGC-CCGCGGGGc -3' miRNA: 3'- gaCUa-ACCGa--GCGa--UCGuGGUGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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