miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29503 3' -54.9 NC_006151.1 + 26885 1.12 0.002247
Target:  5'- uCGACGUCGCACUCCUCCCCAAAGAGCg -3'
miRNA:   3'- -GCUGCAGCGUGAGGAGGGGUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 129576 0.8 0.282281
Target:  5'- aCGGCGUCGCGCUgCUCCCaGAAcuccgcGAGCg -3'
miRNA:   3'- -GCUGCAGCGUGAgGAGGGgUUU------CUCG- -5'
29503 3' -54.9 NC_006151.1 + 114926 0.78 0.37095
Target:  5'- cCGGCGUCGCGCUCggCCuCCGGGGugGGCg -3'
miRNA:   3'- -GCUGCAGCGUGAGgaGG-GGUUUC--UCG- -5'
29503 3' -54.9 NC_006151.1 + 136209 0.77 0.38746
Target:  5'- aCGugG-CGCGCUUCggCCCCGAGGAGa -3'
miRNA:   3'- -GCugCaGCGUGAGGa-GGGGUUUCUCg -5'
29503 3' -54.9 NC_006151.1 + 137327 0.76 0.458107
Target:  5'- uCGACGcgcUCGCgcuGCUCUUCCCCGAGGccgacGGCg -3'
miRNA:   3'- -GCUGC---AGCG---UGAGGAGGGGUUUC-----UCG- -5'
29503 3' -54.9 NC_006151.1 + 73522 0.75 0.476826
Target:  5'- aCGAC-UCGCuggcCUUCUCCgCAAAGAGCa -3'
miRNA:   3'- -GCUGcAGCGu---GAGGAGGgGUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 52179 0.75 0.495915
Target:  5'- gGGCGcgCGCGCgaaCgcggCCCCGAAGAGCu -3'
miRNA:   3'- gCUGCa-GCGUGag-Ga---GGGGUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 72773 0.74 0.545036
Target:  5'- gCGGCGg-GUACgCCUCCUgGAAGAGCg -3'
miRNA:   3'- -GCUGCagCGUGaGGAGGGgUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 7662 0.73 0.585425
Target:  5'- uCGGCG-CGCGCUCCgagggcgCCCCAgccggucgGAGAGa -3'
miRNA:   3'- -GCUGCaGCGUGAGGa------GGGGU--------UUCUCg -5'
29503 3' -54.9 NC_006151.1 + 128911 0.73 0.599711
Target:  5'- gGGCGUCGCGCUCgUCgUCCGAGcgcaccuccacgcccGAGCu -3'
miRNA:   3'- gCUGCAGCGUGAGgAG-GGGUUU---------------CUCG- -5'
29503 3' -54.9 NC_006151.1 + 141566 0.73 0.605849
Target:  5'- cCGGCGcgauccucCGcCGCUCCUCCCCccgggcGAGAGCc -3'
miRNA:   3'- -GCUGCa-------GC-GUGAGGAGGGGu-----UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 88571 0.73 0.616094
Target:  5'- gGACGaCGCACaCCgCCCgGAAGGGCu -3'
miRNA:   3'- gCUGCaGCGUGaGGaGGGgUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 66266 0.73 0.616094
Target:  5'- aGACGcucUCGCGCUgaaaggCCUCCUCGAGGcGCa -3'
miRNA:   3'- gCUGC---AGCGUGA------GGAGGGGUUUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 113818 0.73 0.616094
Target:  5'- aCGGCcUCGCGCUCgUCUCCcucGAGCa -3'
miRNA:   3'- -GCUGcAGCGUGAGgAGGGGuuuCUCG- -5'
29503 3' -54.9 NC_006151.1 + 136747 0.73 0.626351
Target:  5'- cCGAgCGUCGCGCgCCUcgCCCCGGccauGGGCg -3'
miRNA:   3'- -GCU-GCAGCGUGaGGA--GGGGUUu---CUCG- -5'
29503 3' -54.9 NC_006151.1 + 142572 0.73 0.635587
Target:  5'- aGGCG-CGCuCUCCUCUCCGGucccggcGGGGCu -3'
miRNA:   3'- gCUGCaGCGuGAGGAGGGGUU-------UCUCG- -5'
29503 3' -54.9 NC_006151.1 + 135917 0.72 0.657117
Target:  5'- cCGGCGgucgugcgCGCGCUCUgCCgCGGGGAGCc -3'
miRNA:   3'- -GCUGCa-------GCGUGAGGaGGgGUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 14285 0.72 0.687702
Target:  5'- gGGCGUgGCaACUCCUCCCCGu----- -3'
miRNA:   3'- gCUGCAgCG-UGAGGAGGGGUuucucg -5'
29503 3' -54.9 NC_006151.1 + 74993 0.71 0.697816
Target:  5'- gCGGCaUCGCGCgcaCCUgCCCCAucaccuGGGGCa -3'
miRNA:   3'- -GCUGcAGCGUGa--GGA-GGGGUu-----UCUCG- -5'
29503 3' -54.9 NC_006151.1 + 99372 0.71 0.697816
Target:  5'- gCGGCGUCGUGCaccgCCUCCUCGAcgacuacGGGCc -3'
miRNA:   3'- -GCUGCAGCGUGa---GGAGGGGUUu------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.