Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 124761 | 0.71 | 0.707874 |
Target: 5'- gGAC-UCGCGcCUCCgcgCCUCcGAGAGCg -3' miRNA: 3'- gCUGcAGCGU-GAGGa--GGGGuUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 31588 | 0.71 | 0.727788 |
Target: 5'- gGGCGgCGCGCUCCgcgcUCCCCcgccgccuGGGCg -3' miRNA: 3'- gCUGCaGCGUGAGG----AGGGGuuu-----CUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 38089 | 0.71 | 0.727788 |
Target: 5'- uGACGgccgcgcugcUCGCGCUCCgcgacgcgaUCCCCGGGGccGGCc -3' miRNA: 3'- gCUGC----------AGCGUGAGG---------AGGGGUUUC--UCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 4825 | 0.71 | 0.727788 |
Target: 5'- gGACGUCGUcCUCgUCCC---AGAGCc -3' miRNA: 3'- gCUGCAGCGuGAGgAGGGguuUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 122787 | 0.71 | 0.737626 |
Target: 5'- gGGCGgcuGCGCggCCUCgCCCGAcGAGCg -3' miRNA: 3'- gCUGCag-CGUGa-GGAG-GGGUUuCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 72712 | 0.71 | 0.737626 |
Target: 5'- -uGCGcaaaGUGCUCCUcggCCCCGAGGGGCg -3' miRNA: 3'- gcUGCag--CGUGAGGA---GGGGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 130555 | 0.71 | 0.747371 |
Target: 5'- gGGCGgCGCGCUgCCgCCCCAcGAGuGCa -3' miRNA: 3'- gCUGCaGCGUGA-GGaGGGGU-UUCuCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 27229 | 0.71 | 0.747371 |
Target: 5'- cCGugGaCGCGCaCCUCCUCGGGGucgGGCg -3' miRNA: 3'- -GCugCaGCGUGaGGAGGGGUUUC---UCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 99531 | 0.7 | 0.757014 |
Target: 5'- uGGCGcCGCGC-CCg-CCCAcGGAGCa -3' miRNA: 3'- gCUGCaGCGUGaGGagGGGUuUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 65505 | 0.7 | 0.757014 |
Target: 5'- cCGGCGgagCGCGcCUCCUCCgCGGccAGcAGCg -3' miRNA: 3'- -GCUGCa--GCGU-GAGGAGGgGUU--UC-UCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 18910 | 0.7 | 0.757014 |
Target: 5'- uGGCGUucgugUGCAcCUCCUCgCCGAAG-GCg -3' miRNA: 3'- gCUGCA-----GCGU-GAGGAGgGGUUUCuCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 99474 | 0.7 | 0.766546 |
Target: 5'- uGACGgcgGCGCUggggCUCCCCGAgaAGGGCg -3' miRNA: 3'- gCUGCag-CGUGAg---GAGGGGUU--UCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 93038 | 0.7 | 0.766546 |
Target: 5'- cCGuCGUCGC-CUCCcCCCCGc-GGGCc -3' miRNA: 3'- -GCuGCAGCGuGAGGaGGGGUuuCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 136647 | 0.7 | 0.775958 |
Target: 5'- cCGugGg-GCGCUCgCcCCUCGGGGAGCg -3' miRNA: 3'- -GCugCagCGUGAG-GaGGGGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 64819 | 0.7 | 0.775958 |
Target: 5'- cCGGCGgccaGCUCCUCCUCGAGGAuGUc -3' miRNA: 3'- -GCUGCagcgUGAGGAGGGGUUUCU-CG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 74543 | 0.7 | 0.785241 |
Target: 5'- gCGugGUUGaGCUCCUCCU---GGGGCu -3' miRNA: 3'- -GCugCAGCgUGAGGAGGGguuUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 134527 | 0.7 | 0.785241 |
Target: 5'- gCGGCaUCGUcgUCUUCCCCAcgcccuggGAGAGCg -3' miRNA: 3'- -GCUGcAGCGugAGGAGGGGU--------UUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 67078 | 0.7 | 0.785241 |
Target: 5'- uCGACa-CGcCGCUCUUCUCCGAGGAcGCg -3' miRNA: 3'- -GCUGcaGC-GUGAGGAGGGGUUUCU-CG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 49690 | 0.7 | 0.798903 |
Target: 5'- gGACGcgcccccggagagCGCACccCCUCCCCGggagggggugcucGGGAGCg -3' miRNA: 3'- gCUGCa------------GCGUGa-GGAGGGGU-------------UUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 39856 | 0.69 | 0.803383 |
Target: 5'- gGGCcUCGCcgaGCUCCgcggCCCCGAGG-GCc -3' miRNA: 3'- gCUGcAGCG---UGAGGa---GGGGUUUCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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