miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29503 3' -54.9 NC_006151.1 + 27327 0.66 0.936919
Target:  5'- gGACGggGgGCUgCUCCCCGGgaccGGGGUc -3'
miRNA:   3'- gCUGCagCgUGAgGAGGGGUU----UCUCG- -5'
29503 3' -54.9 NC_006151.1 + 30560 0.66 0.936919
Target:  5'- -cGCGcCGCACgcgCCgucccgcggCCCCGucGGGCg -3'
miRNA:   3'- gcUGCaGCGUGa--GGa--------GGGGUuuCUCG- -5'
29503 3' -54.9 NC_006151.1 + 31473 0.68 0.861547
Target:  5'- cCGGCaUCGguCUCC-CCCCAAaacGGAGa -3'
miRNA:   3'- -GCUGcAGCguGAGGaGGGGUU---UCUCg -5'
29503 3' -54.9 NC_006151.1 + 31588 0.71 0.727788
Target:  5'- gGGCGgCGCGCUCCgcgcUCCCCcgccgccuGGGCg -3'
miRNA:   3'- gCUGCaGCGUGAGG----AGGGGuuu-----CUCG- -5'
29503 3' -54.9 NC_006151.1 + 33275 0.66 0.941662
Target:  5'- gCGGCGgccaUCGCccgACcCUUCCCCGGGGcGCg -3'
miRNA:   3'- -GCUGC----AGCG---UGaGGAGGGGUUUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 33971 0.68 0.883494
Target:  5'- gCGGCGccCGCGCggggacacucuuUCC-CCCgGAGGGGCg -3'
miRNA:   3'- -GCUGCa-GCGUG------------AGGaGGGgUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 36037 0.67 0.890368
Target:  5'- cCGGCGcCGCgGCUCCUCCggCGAGGAu- -3'
miRNA:   3'- -GCUGCaGCG-UGAGGAGGg-GUUUCUcg -5'
29503 3' -54.9 NC_006151.1 + 36642 0.69 0.845867
Target:  5'- gCGGCGgcgGCGCccCCUCCgCCGGAGGGg -3'
miRNA:   3'- -GCUGCag-CGUGa-GGAGG-GGUUUCUCg -5'
29503 3' -54.9 NC_006151.1 + 37331 0.67 0.915548
Target:  5'- cCGACGggcCGCuGCUCa-CCCCGcucgGGGAGCc -3'
miRNA:   3'- -GCUGCa--GCG-UGAGgaGGGGU----UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 37406 0.68 0.876396
Target:  5'- aCGGCGgCGC-CggggaCUCCCgCGAGGGGCu -3'
miRNA:   3'- -GCUGCaGCGuGag---GAGGG-GUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 38089 0.71 0.727788
Target:  5'- uGACGgccgcgcugcUCGCGCUCCgcgacgcgaUCCCCGGGGccGGCc -3'
miRNA:   3'- gCUGC----------AGCGUGAGG---------AGGGGUUUC--UCG- -5'
29503 3' -54.9 NC_006151.1 + 39072 0.68 0.861547
Target:  5'- gCGugGUgGUGCUCUacgacccgcugCCCCAcgAGGAGCu -3'
miRNA:   3'- -GCugCAgCGUGAGGa----------GGGGU--UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 39856 0.69 0.803383
Target:  5'- gGGCcUCGCcgaGCUCCgcggCCCCGAGG-GCc -3'
miRNA:   3'- gCUGcAGCG---UGAGGa---GGGGUUUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 42576 0.66 0.931936
Target:  5'- cCGGCGccaCGCGCcgCCcgUCCCCGAGaGGCc -3'
miRNA:   3'- -GCUGCa--GCGUGa-GG--AGGGGUUUcUCG- -5'
29503 3' -54.9 NC_006151.1 + 45444 0.67 0.913791
Target:  5'- gGGCGUCGCACgcaCCgCggggcggcgacggaCCCAgggguGAGAGCg -3'
miRNA:   3'- gCUGCAGCGUGa--GGaG--------------GGGU-----UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 49690 0.7 0.798903
Target:  5'- gGACGcgcccccggagagCGCACccCCUCCCCGggagggggugcucGGGAGCg -3'
miRNA:   3'- gCUGCa------------GCGUGa-GGAGGGGU-------------UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 52179 0.75 0.495915
Target:  5'- gGGCGcgCGCGCgaaCgcggCCCCGAAGAGCu -3'
miRNA:   3'- gCUGCa-GCGUGag-Ga---GGGGUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 53553 0.66 0.931425
Target:  5'- aGGCG-CGCaaACUCCucguggcUCCCCGc-GAGCa -3'
miRNA:   3'- gCUGCaGCG--UGAGG-------AGGGGUuuCUCG- -5'
29503 3' -54.9 NC_006151.1 + 55151 0.66 0.941198
Target:  5'- aGACGgUGCGCUCgUaCCUCGAcgagaccGGGGCg -3'
miRNA:   3'- gCUGCaGCGUGAGgA-GGGGUU-------UCUCG- -5'
29503 3' -54.9 NC_006151.1 + 55451 0.66 0.936919
Target:  5'- cCGGCGcCGCcggCC-CCgCCGGGGGGCg -3'
miRNA:   3'- -GCUGCaGCGugaGGaGG-GGUUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.