Results 1 - 20 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 392 | 0.69 | 0.83773 |
Target: 5'- uGACGcCGgGCUCCUCCCCc------ -3' miRNA: 3'- gCUGCaGCgUGAGGAGGGGuuucucg -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 2339 | 0.66 | 0.946168 |
Target: 5'- uCGGCGUCGgGCUCCagcagCgCCGcGGcGCa -3' miRNA: 3'- -GCUGCAGCgUGAGGa----GgGGUuUCuCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 3607 | 0.66 | 0.941662 |
Target: 5'- uCGuCGUCGCGgUggccguggCCgUCCCCGcgGAGGGCc -3' miRNA: 3'- -GCuGCAGCGUgA--------GG-AGGGGU--UUCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 4825 | 0.71 | 0.727788 |
Target: 5'- gGACGUCGUcCUCgUCCC---AGAGCc -3' miRNA: 3'- gCUGCAGCGuGAGgAGGGguuUCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 6636 | 0.68 | 0.853808 |
Target: 5'- aCGAUGgagacCGCGCUUauaagcgCCCCGAGGAGa -3' miRNA: 3'- -GCUGCa----GCGUGAGga-----GGGGUUUCUCg -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 7662 | 0.73 | 0.585425 |
Target: 5'- uCGGCG-CGCGCUCCgagggcgCCCCAgccggucgGAGAGa -3' miRNA: 3'- -GCUGCaGCGUGAGGa------GGGGU--------UUCUCg -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 8301 | 0.68 | 0.883494 |
Target: 5'- gGGCGcCGCG-UCCcgCCCCGAgcccccGGGGCg -3' miRNA: 3'- gCUGCaGCGUgAGGa-GGGGUU------UCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 14285 | 0.72 | 0.687702 |
Target: 5'- gGGCGUgGCaACUCCUCCCCGu----- -3' miRNA: 3'- gCUGCAgCG-UGAGGAGGGGUuucucg -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 15321 | 0.69 | 0.820902 |
Target: 5'- gCGACGUcuacgaccCGCGCguccUCUCCCCGccggucaucGAGGGCc -3' miRNA: 3'- -GCUGCA--------GCGUGa---GGAGGGGU---------UUCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 18298 | 0.68 | 0.853808 |
Target: 5'- aGACGUCGaagccggaGCggggcgCCUCCUCGGGGcGCa -3' miRNA: 3'- gCUGCAGCg-------UGa-----GGAGGGGUUUCuCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 18738 | 0.67 | 0.897014 |
Target: 5'- gCGuCGUCGcCGCcgCCggggCCCCAcGGGGUg -3' miRNA: 3'- -GCuGCAGC-GUGa-GGa---GGGGUuUCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 18910 | 0.7 | 0.757014 |
Target: 5'- uGGCGUucgugUGCAcCUCCUCgCCGAAG-GCg -3' miRNA: 3'- gCUGCA-----GCGU-GAGGAGgGGUUUCuCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 19490 | 0.66 | 0.946168 |
Target: 5'- cCGAUGcCcCGCUCCggggCCUCGGGGAcGCa -3' miRNA: 3'- -GCUGCaGcGUGAGGa---GGGGUUUCU-CG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 20412 | 0.68 | 0.882092 |
Target: 5'- cCGuCGUCGCccccuccucgucCUCCUCCUCuucgucGGAGCg -3' miRNA: 3'- -GCuGCAGCGu-----------GAGGAGGGGuu----UCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 21013 | 0.66 | 0.936919 |
Target: 5'- gCGACGU-GCACgcugacgCCggcgCCCCuGAAGAGg -3' miRNA: 3'- -GCUGCAgCGUGa------GGa---GGGG-UUUCUCg -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 21790 | 0.69 | 0.812225 |
Target: 5'- gGGCGaacggGCACUCUUgCCCCucgGGGAGCg -3' miRNA: 3'- gCUGCag---CGUGAGGA-GGGGu--UUCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 23688 | 0.66 | 0.941662 |
Target: 5'- uCGACGgaggGCAUggCgUCCCCGGGGcAGCc -3' miRNA: 3'- -GCUGCag--CGUGa-GgAGGGGUUUC-UCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 26885 | 1.12 | 0.002247 |
Target: 5'- uCGACGUCGCACUCCUCCCCAAAGAGCg -3' miRNA: 3'- -GCUGCAGCGUGAGGAGGGGUUUCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 26951 | 0.67 | 0.908999 |
Target: 5'- aGACGUCGCGCUCguugagCUCgCgCAGcgcgcugcgcagcGGGGCg -3' miRNA: 3'- gCUGCAGCGUGAG------GAGgG-GUU-------------UCUCG- -5' |
|||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 27229 | 0.71 | 0.747371 |
Target: 5'- cCGugGaCGCGCaCCUCCUCGGGGucgGGCg -3' miRNA: 3'- -GCugCaGCGUGaGGAGGGGUUUC---UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home