Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29503 | 3' | -54.9 | NC_006151.1 | + | 142572 | 0.73 | 0.635587 |
Target: 5'- aGGCG-CGCuCUCCUCUCCGGucccggcGGGGCu -3' miRNA: 3'- gCUGCaGCGuGAGGAGGGGUU-------UCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 141862 | 0.68 | 0.869079 |
Target: 5'- -cGCGcCGCGC-CCUCUggugCCGGAGGGCc -3' miRNA: 3'- gcUGCaGCGUGaGGAGG----GGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 141771 | 0.67 | 0.890368 |
Target: 5'- uGGCGUCGCcggUUCUgUCCCGGGGAcGCg -3' miRNA: 3'- gCUGCAGCGu--GAGGaGGGGUUUCU-CG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 141566 | 0.73 | 0.605849 |
Target: 5'- cCGGCGcgauccucCGcCGCUCCUCCCCccgggcGAGAGCc -3' miRNA: 3'- -GCUGCa-------GC-GUGAGGAGGGGu-----UUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 140146 | 0.66 | 0.946168 |
Target: 5'- aCGugGgucaaGCucaUCCUCaCCAAGGGGCu -3' miRNA: 3'- -GCugCag---CGug-AGGAGgGGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 139588 | 0.67 | 0.903428 |
Target: 5'- gGGC-UCGCGC-CC-CCCCGAGcGGCg -3' miRNA: 3'- gCUGcAGCGUGaGGaGGGGUUUcUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 137327 | 0.76 | 0.458107 |
Target: 5'- uCGACGcgcUCGCgcuGCUCUUCCCCGAGGccgacGGCg -3' miRNA: 3'- -GCUGC---AGCG---UGAGGAGGGGUUUC-----UCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 136747 | 0.73 | 0.626351 |
Target: 5'- cCGAgCGUCGCGCgCCUcgCCCCGGccauGGGCg -3' miRNA: 3'- -GCU-GCAGCGUGaGGA--GGGGUUu---CUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 136647 | 0.7 | 0.775958 |
Target: 5'- cCGugGg-GCGCUCgCcCCUCGGGGAGCg -3' miRNA: 3'- -GCugCagCGUGAG-GaGGGGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 136209 | 0.77 | 0.38746 |
Target: 5'- aCGugG-CGCGCUUCggCCCCGAGGAGa -3' miRNA: 3'- -GCugCaGCGUGAGGa-GGGGUUUCUCg -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 135917 | 0.72 | 0.657117 |
Target: 5'- cCGGCGgucgugcgCGCGCUCUgCCgCGGGGAGCc -3' miRNA: 3'- -GCUGCa-------GCGUGAGGaGGgGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 134527 | 0.7 | 0.785241 |
Target: 5'- gCGGCaUCGUcgUCUUCCCCAcgcccuggGAGAGCg -3' miRNA: 3'- -GCUGcAGCGugAGGAGGGGU--------UUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 133295 | 0.68 | 0.869079 |
Target: 5'- -cACGUCGaGgUUCUCCCCGGGG-GCg -3' miRNA: 3'- gcUGCAGCgUgAGGAGGGGUUUCuCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 132079 | 0.66 | 0.941662 |
Target: 5'- uCGACcagGUCgGCGCcgUCCUCCUCGAuGAGg -3' miRNA: 3'- -GCUG---CAG-CGUG--AGGAGGGGUUuCUCg -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 130555 | 0.71 | 0.747371 |
Target: 5'- gGGCGgCGCGCUgCCgCCCCAcGAGuGCa -3' miRNA: 3'- gCUGCaGCGUGA-GGaGGGGU-UUCuCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 130382 | 0.66 | 0.936919 |
Target: 5'- gCGGCGUCcaGCGCgaaggccagcgCCUCgCCCGc-GAGCg -3' miRNA: 3'- -GCUGCAG--CGUGa----------GGAG-GGGUuuCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 130304 | 0.67 | 0.915548 |
Target: 5'- cCGACGgcgcggagCGCGCgcgCCgcgCgCUCGGGGAGCu -3' miRNA: 3'- -GCUGCa-------GCGUGa--GGa--G-GGGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 130215 | 0.69 | 0.820902 |
Target: 5'- gGACG-CGCAgCUCCggCCaguaggCCAGGGAGCc -3' miRNA: 3'- gCUGCaGCGU-GAGGa-GG------GGUUUCUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 129576 | 0.8 | 0.282281 |
Target: 5'- aCGGCGUCGCGCUgCUCCCaGAAcuccgcGAGCg -3' miRNA: 3'- -GCUGCAGCGUGAgGAGGGgUUU------CUCG- -5' |
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29503 | 3' | -54.9 | NC_006151.1 | + | 129423 | 0.69 | 0.845867 |
Target: 5'- gCGAgGUCG-ACgUCCggCCCCAAGuGGGCg -3' miRNA: 3'- -GCUgCAGCgUG-AGGa-GGGGUUU-CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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