miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 31635 0.72 0.53799
Target:  5'- cCGGCACGAGcGCacGCGggCGCGcGGGGa -3'
miRNA:   3'- -GUCGUGCUC-CGacCGCaaGUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 4177 0.72 0.541928
Target:  5'- gCAGCGCggccgucaccuccucGAGGCaGGCGggCcCGAGGGc -3'
miRNA:   3'- -GUCGUG---------------CUCCGaCCGCaaGuGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 8077 0.72 0.547853
Target:  5'- uGGCgACGGGGCgUGGCGgggcgUgGCaGAGGGg -3'
miRNA:   3'- gUCG-UGCUCCG-ACCGCa----AgUG-CUCCC- -5'
29504 5' -57.3 NC_006151.1 + 21386 0.72 0.547853
Target:  5'- gGGCACGAcGGCcGGCGgg-GCGaAGGGg -3'
miRNA:   3'- gUCGUGCU-CCGaCCGCaagUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 89543 0.71 0.557773
Target:  5'- gCAGCGcCGAGGCcGGUGgaggcCGCGAGGc -3'
miRNA:   3'- -GUCGU-GCUCCGaCCGCaa---GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 88806 0.71 0.567742
Target:  5'- gGGCGCGAGcGCguccGGUGg--GCGAGGGa -3'
miRNA:   3'- gUCGUGCUC-CGa---CCGCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 132088 0.71 0.596883
Target:  5'- uCGGCGCcguccuccucgauGAGGCcGGCGcgCACGAGcGGc -3'
miRNA:   3'- -GUCGUG-------------CUCCGaCCGCaaGUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 102975 0.71 0.597893
Target:  5'- aCGGCGCGcuGCUGGCGcagcugCugGAGGcGg -3'
miRNA:   3'- -GUCGUGCucCGACCGCaa----GugCUCC-C- -5'
29504 5' -57.3 NC_006151.1 + 73836 0.71 0.597893
Target:  5'- uCGGCGC-AGGCaaagaGGCGUUCACGGgcgccGGGu -3'
miRNA:   3'- -GUCGUGcUCCGa----CCGCAAGUGCU-----CCC- -5'
29504 5' -57.3 NC_006151.1 + 90664 0.71 0.61205
Target:  5'- -uGCGCGGGGC-GGCGggCcgcuugucccccgcgGCGGGGGc -3'
miRNA:   3'- guCGUGCUCCGaCCGCaaG---------------UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 91512 0.7 0.622182
Target:  5'- gCAGCccggccucgcugaagACGAGGaaGGCGUgCGCGAGGu -3'
miRNA:   3'- -GUCG---------------UGCUCCgaCCGCAaGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 55954 0.7 0.628264
Target:  5'- uGGCACGcccucccgcGGCUGGUGUgcgaggugCGCGAGGu -3'
miRNA:   3'- gUCGUGCu--------CCGACCGCAa-------GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 4218 0.7 0.628264
Target:  5'- gCGGC-CGGGGCgcgGGCGggCGCGGGc- -3'
miRNA:   3'- -GUCGuGCUCCGa--CCGCaaGUGCUCcc -5'
29504 5' -57.3 NC_006151.1 + 142008 0.7 0.658661
Target:  5'- gCGGCGUGGGGCgGGUGUggcacCACGuGGGu -3'
miRNA:   3'- -GUCGUGCUCCGaCCGCAa----GUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 90050 0.69 0.668762
Target:  5'- gGGCGaugcCGAGGCgcgccucGGUgcgcacGUUCACGAGGGc -3'
miRNA:   3'- gUCGU----GCUCCGa------CCG------CAAGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 89829 0.69 0.668762
Target:  5'- gAGCGCGAuGCUgccGGCGUagGCGuGGGu -3'
miRNA:   3'- gUCGUGCUcCGA---CCGCAagUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 84132 0.69 0.678834
Target:  5'- aAGCGCG-GGCa-GCGg-CACGAGGGg -3'
miRNA:   3'- gUCGUGCuCCGacCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 134997 0.69 0.678834
Target:  5'- gGGCGCGuc-UUGGCGggggCGCGGGGGg -3'
miRNA:   3'- gUCGUGCuccGACCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 57199 0.69 0.688868
Target:  5'- uGGCGCGAGGCgaaGGCccgcUCgACGAGGc -3'
miRNA:   3'- gUCGUGCUCCGa--CCGca--AG-UGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 99608 0.69 0.694867
Target:  5'- -cGCGCcGGGCUGGCGcacagcgccgcgCGCGAGGc -3'
miRNA:   3'- guCGUGcUCCGACCGCaa----------GUGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.