miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 142534 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142508 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142482 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142456 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142430 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142404 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142378 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142008 0.7 0.658661
Target:  5'- gCGGCGUGGGGCgGGUGUggcacCACGuGGGu -3'
miRNA:   3'- -GUCGUGCUCCGaCCGCAa----GUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 141749 0.68 0.747794
Target:  5'- gGGCGCGGGGCgcgcgccccggUGGCGUcgccgguucugUCcCGGGGa -3'
miRNA:   3'- gUCGUGCUCCG-----------ACCGCA-----------AGuGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 141493 0.66 0.85303
Target:  5'- gAGCcucCGcGGCgacgGGCGUcucCACGGGGGc -3'
miRNA:   3'- gUCGu--GCuCCGa---CCGCAa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 139624 0.75 0.367056
Target:  5'- gCGGCugGGGGCcauccGGCGccggCGCGGGGGu -3'
miRNA:   3'- -GUCGugCUCCGa----CCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 135121 0.67 0.785205
Target:  5'- -cGCGCGGGGCgGGC-UggGCGGGGa -3'
miRNA:   3'- guCGUGCUCCGaCCGcAagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 134997 0.69 0.678834
Target:  5'- gGGCGCGuc-UUGGCGggggCGCGGGGGg -3'
miRNA:   3'- gUCGUGCuccGACCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 133471 0.72 0.508792
Target:  5'- aGGCccGCGAGGCggccgcgGGCGUcaccuuggcggCGCGGGGGg -3'
miRNA:   3'- gUCG--UGCUCCGa------CCGCAa----------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 133395 0.66 0.861454
Target:  5'- gCGGC-CGGGGCcgagcgGGCGgucuuggccgcggaCGCGGGGGu -3'
miRNA:   3'- -GUCGuGCUCCGa-----CCGCaa------------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 132814 0.69 0.708789
Target:  5'- aCAGCGCGuccGGGCUGGCcgccCGCGGGa- -3'
miRNA:   3'- -GUCGUGC---UCCGACCGcaa-GUGCUCcc -5'
29504 5' -57.3 NC_006151.1 + 132088 0.71 0.596883
Target:  5'- uCGGCGCcguccuccucgauGAGGCcGGCGcgCACGAGcGGc -3'
miRNA:   3'- -GUCGUG-------------CUCCGaCCGCaaGUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 130946 0.72 0.518454
Target:  5'- gCGGCGgGGGGUcGcGCGggCGCGGGGGc -3'
miRNA:   3'- -GUCGUgCUCCGaC-CGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 130793 0.66 0.85303
Target:  5'- -cGCGCGuccaGCUGGCGUaCGCGGcguccGGGu -3'
miRNA:   3'- guCGUGCuc--CGACCGCAaGUGCU-----CCC- -5'
29504 5' -57.3 NC_006151.1 + 130522 0.67 0.811877
Target:  5'- gGGCGCG-GGCgucGCGUacacgcccccgCGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGac-CGCAa----------GUGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.