miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 5' -57.2 NC_006151.1 + 17104 0.66 0.872996
Target:  5'- cGUCGGGG-CGCcGGGGGcuccggCGGCggugCUg -3'
miRNA:   3'- aCAGCUCCaGCGaCCUCCa-----GUCGa---GG- -5'
29505 5' -57.2 NC_006151.1 + 49635 0.66 0.865657
Target:  5'- aGUgGGGGUgggccgUGgaGGAGGUCgAGCccUCCg -3'
miRNA:   3'- aCAgCUCCA------GCgaCCUCCAG-UCG--AGG- -5'
29505 5' -57.2 NC_006151.1 + 48132 0.66 0.850363
Target:  5'- -uUCGGcGG-CGCUGGGGGUUccuGGCaCCg -3'
miRNA:   3'- acAGCU-CCaGCGACCUCCAG---UCGaGG- -5'
29505 5' -57.2 NC_006151.1 + 20479 0.66 0.842422
Target:  5'- --cCGGGGgggCGC-GGGGGUCgucggcGGCUCUg -3'
miRNA:   3'- acaGCUCCa--GCGaCCUCCAG------UCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 28166 0.67 0.82598
Target:  5'- cGUCGGcGUCGUUGGGGcggcgagugccGUCGGCcgggCCg -3'
miRNA:   3'- aCAGCUcCAGCGACCUC-----------CAGUCGa---GG- -5'
29505 5' -57.2 NC_006151.1 + 57188 0.67 0.817496
Target:  5'- aGUCGGGGUCGUggcGcGAGGcgaaGGC-CCg -3'
miRNA:   3'- aCAGCUCCAGCGa--C-CUCCag--UCGaGG- -5'
29505 5' -57.2 NC_006151.1 + 67761 0.67 0.817496
Target:  5'- cGUCGGGGUgcggcgucgCGUUGaGGGcGUCcacguGCUCCa -3'
miRNA:   3'- aCAGCUCCA---------GCGAC-CUC-CAGu----CGAGG- -5'
29505 5' -57.2 NC_006151.1 + 135006 0.67 0.817496
Target:  5'- uUGgCGGGGgCGCgGGGGGgcagCAGCggggCCg -3'
miRNA:   3'- -ACaGCUCCaGCGaCCUCCa---GUCGa---GG- -5'
29505 5' -57.2 NC_006151.1 + 27315 0.67 0.817496
Target:  5'- gGUCGAGG-CGggGGAcGGggggCuGCUCCc -3'
miRNA:   3'- aCAGCUCCaGCgaCCU-CCa---GuCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 14419 0.67 0.808846
Target:  5'- aGUCGGGGg-GCUucccGGGUgCGGCUCCu -3'
miRNA:   3'- aCAGCUCCagCGAcc--UCCA-GUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 62235 0.67 0.788365
Target:  5'- cGUCGAGGUCGUcguguccggcuacgUGcAGGU--GCUCCc -3'
miRNA:   3'- aCAGCUCCAGCG--------------ACcUCCAguCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 88112 0.68 0.772751
Target:  5'- cGUCGAGGUCcgacaGCgGGcGGgc-GCUCCg -3'
miRNA:   3'- aCAGCUCCAG-----CGaCCuCCaguCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 27460 0.68 0.769024
Target:  5'- gGUCGGGGgcgggcggucgaGCgGGGGGUCGGCg-- -3'
miRNA:   3'- aCAGCUCCag----------CGaCCUCCAGUCGagg -5'
29505 5' -57.2 NC_006151.1 + 22900 0.68 0.753928
Target:  5'- aUGUCaGAGGgCGagacGaAGGUCGGCUCCg -3'
miRNA:   3'- -ACAG-CUCCaGCga--CcUCCAGUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 111851 0.69 0.715085
Target:  5'- cGUCGGGGggCGCUcGGGGUC-GCaggCCg -3'
miRNA:   3'- aCAGCUCCa-GCGAcCUCCAGuCGa--GG- -5'
29505 5' -57.2 NC_006151.1 + 13102 0.69 0.68519
Target:  5'- aGggaGAGGUCGC-GGcGGGUCAcgcgcGCUCCc -3'
miRNA:   3'- aCag-CUCCAGCGaCC-UCCAGU-----CGAGG- -5'
29505 5' -57.2 NC_006151.1 + 42812 0.69 0.68519
Target:  5'- cGUCGAGGUCGUgUGGGGGagAGagaCg -3'
miRNA:   3'- aCAGCUCCAGCG-ACCUCCagUCgagG- -5'
29505 5' -57.2 NC_006151.1 + 139197 0.7 0.654905
Target:  5'- gGUCGGGG-CGCUGGAGcuccuggCGGCgacgcugCCg -3'
miRNA:   3'- aCAGCUCCaGCGACCUCca-----GUCGa------GG- -5'
29505 5' -57.2 NC_006151.1 + 133610 0.7 0.654905
Target:  5'- gGcCGAGGggCGuCUGGGGGUCgcGGCggCCg -3'
miRNA:   3'- aCaGCUCCa-GC-GACCUCCAG--UCGa-GG- -5'
29505 5' -57.2 NC_006151.1 + 130198 0.7 0.644763
Target:  5'- -cUCGGGGUgccCGCU-GAGGacgcgCAGCUCCg -3'
miRNA:   3'- acAGCUCCA---GCGAcCUCCa----GUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.