miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 5860 0.73 0.665455
Target:  5'- gGggGACGAgcGCCCGgGGCcGCCGGGg -3'
miRNA:   3'- aCuaCUGCUa-CGGGUgCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 5988 0.72 0.695971
Target:  5'- cUGAUGGaGA-GCCCGaccgggggaccCGGCGGCCGGGg -3'
miRNA:   3'- -ACUACUgCUaCGGGU-----------GCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 101199 0.72 0.706048
Target:  5'- ---gGACGcGUGCCUgcGCGAgGGCCAGGc -3'
miRNA:   3'- acuaCUGC-UACGGG--UGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 20106 0.72 0.706048
Target:  5'- gGggGACGGgcGCCC-CGGCGACgGGGc -3'
miRNA:   3'- aCuaCUGCUa-CGGGuGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 128384 0.72 0.706048
Target:  5'- aGGUcACGAgGUCCACGGCGGCCAc- -3'
miRNA:   3'- aCUAcUGCUaCGGGUGCUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 95535 0.72 0.716061
Target:  5'- cGAUGAgGAaggccaUGUCCugGAUGGgCAGGg -3'
miRNA:   3'- aCUACUgCU------ACGGGugCUGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 66797 0.72 0.716061
Target:  5'- cGgcGGCGggGCCCggggacgacgACGGCGACgAGGa -3'
miRNA:   3'- aCuaCUGCuaCGGG----------UGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 45405 0.72 0.716061
Target:  5'- gUGGUGGUGGUGCCgGuguguUGugGGCCGGGg -3'
miRNA:   3'- -ACUACUGCUACGGgU-----GCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133825 0.72 0.716061
Target:  5'- gGGUGGCGuaacccagGgCCACGACGagcaccGCCAGGa -3'
miRNA:   3'- aCUACUGCua------CgGGUGCUGC------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 109109 0.72 0.726003
Target:  5'- gUGA-GGCGAgccgccgGCCCGCGcccgcCGGCCGGGc -3'
miRNA:   3'- -ACUaCUGCUa------CGGGUGCu----GCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81171 0.72 0.726003
Target:  5'- gGGuUGGCGAUGUCCACGcCGccgagcguguacGCCGGGc -3'
miRNA:   3'- aCU-ACUGCUACGGGUGCuGC------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 17124 0.72 0.726003
Target:  5'- cGgcGGCGGUGCUgCGggaGGCGGCCAGGa -3'
miRNA:   3'- aCuaCUGCUACGG-GUg--CUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 105675 0.72 0.726003
Target:  5'- ----uACGcgGCCUACGGCGGCgCGGGg -3'
miRNA:   3'- acuacUGCuaCGGGUGCUGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 43680 0.72 0.735863
Target:  5'- cUGgcGACGAgggGCCCGCcggcGCGACgGGGa -3'
miRNA:   3'- -ACuaCUGCUa--CGGGUGc---UGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 58498 0.72 0.735863
Target:  5'- ---gGAUGAUGCCCGCGcGCgGGCCGGc -3'
miRNA:   3'- acuaCUGCUACGGGUGC-UG-CUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 2415 0.71 0.745632
Target:  5'- ---cGGCGAgGCCC-CGGCGGCCgcAGGa -3'
miRNA:   3'- acuaCUGCUaCGGGuGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 90113 0.71 0.755301
Target:  5'- ---cGGCGAcGCCCAUGACGAggCAGGc -3'
miRNA:   3'- acuaCUGCUaCGGGUGCUGCUg-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 57449 0.71 0.76486
Target:  5'- ---cGGCGGccCCCGCGuCGGCCAGGu -3'
miRNA:   3'- acuaCUGCUacGGGUGCuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 2284 0.71 0.76486
Target:  5'- ---cGGCGGggcGCCCGCGGCGGcgacggcgcCCGGGg -3'
miRNA:   3'- acuaCUGCUa--CGGGUGCUGCU---------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 141709 0.71 0.76486
Target:  5'- gGcgGACGcgGUGCCCGgGGCGuuaauacCCAGGg -3'
miRNA:   3'- aCuaCUGC--UACGGGUgCUGCu------GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.