miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 142264 0.67 0.93613
Target:  5'- ---cGGCGAggagcGCCCcguccCGGCGGCCAGa -3'
miRNA:   3'- acuaCUGCUa----CGGGu----GCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 142135 0.76 0.503685
Target:  5'- gGAUGGCgcccGAUGCCUGCGcCGGCgCAGGg -3'
miRNA:   3'- aCUACUG----CUACGGGUGCuGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 141709 0.71 0.76486
Target:  5'- gGcgGACGcgGUGCCCGgGGCGuuaauacCCAGGg -3'
miRNA:   3'- aCuaCUGC--UACGGGUgCUGCu------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 141422 0.66 0.957325
Target:  5'- gUGcgGGCGcgGCCCggcgcgaACGACGuCCccguAGGa -3'
miRNA:   3'- -ACuaCUGCuaCGGG-------UGCUGCuGG----UCC- -5'
29506 5' -54.3 NC_006151.1 + 135466 0.66 0.9577
Target:  5'- aGGUGcGCGccagcGUGUCCGCG-CGgGCCAGGc -3'
miRNA:   3'- aCUAC-UGC-----UACGGGUGCuGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133825 0.72 0.716061
Target:  5'- gGGUGGCGuaacccagGgCCACGACGagcaccGCCAGGa -3'
miRNA:   3'- aCUACUGCua------CgGGUGCUGC------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133691 0.68 0.902381
Target:  5'- cGA-GGCGGUcucGUCgGCGGCGACCcGGg -3'
miRNA:   3'- aCUaCUGCUA---CGGgUGCUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 133613 0.7 0.79279
Target:  5'- cGAggGGCGucugggGgUCGCGGCGGCCGGGg -3'
miRNA:   3'- aCUa-CUGCua----CgGGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133465 0.66 0.961322
Target:  5'- ---cGGuCGAgGCCCGCGagGCGGCCGcGGg -3'
miRNA:   3'- acuaCU-GCUaCGGGUGC--UGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 133377 0.76 0.51343
Target:  5'- gUGGUGGCG--GCCgggGCGGCGGCCGGGg -3'
miRNA:   3'- -ACUACUGCuaCGGg--UGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133272 0.7 0.809815
Target:  5'- cUGAaGGCGA-GCCgGCGGCGGCCcacgucgAGGu -3'
miRNA:   3'- -ACUaCUGCUaCGGgUGCUGCUGG-------UCC- -5'
29506 5' -54.3 NC_006151.1 + 131738 0.69 0.844486
Target:  5'- gGGUGGCGG-GCCCGggcgaGGCGACCGu- -3'
miRNA:   3'- aCUACUGCUaCGGGUg----CUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 130920 0.74 0.583486
Target:  5'- cGGUGGCcggGCCCGCGGgGGCgGGGg -3'
miRNA:   3'- aCUACUGcuaCGGGUGCUgCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 130695 0.66 0.961322
Target:  5'- nGAUGucCGGggGCCCGacggGGCGGCCcGGGg -3'
miRNA:   3'- aCUACu-GCUa-CGGGUg---CUGCUGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 130663 0.68 0.902381
Target:  5'- -cGUGaACGucaGUGCCCGCGgggcGCGGCgCAGGa -3'
miRNA:   3'- acUAC-UGC---UACGGGUGC----UGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 129511 0.7 0.810696
Target:  5'- cGAUGACGAgccgcuUGCCgC-CGACGGgggggcCCGGGg -3'
miRNA:   3'- aCUACUGCU------ACGG-GuGCUGCU------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 128445 0.67 0.925841
Target:  5'- ---gGGCGucucgGCCCACGugGcGCCgAGGa -3'
miRNA:   3'- acuaCUGCua---CGGGUGCugC-UGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 128384 0.72 0.706048
Target:  5'- aGGUcACGAgGUCCACGGCGGCCAc- -3'
miRNA:   3'- aCUAcUGCUaCGGGUGCUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 127386 0.67 0.940915
Target:  5'- gGGUGGCGggGgCCGCGGcCGAgucgaCGGGa -3'
miRNA:   3'- aCUACUGCuaCgGGUGCU-GCUg----GUCC- -5'
29506 5' -54.3 NC_006151.1 + 125787 0.74 0.614163
Target:  5'- aUGGUGGaGGUGCCCGaGACGAUCAGc -3'
miRNA:   3'- -ACUACUgCUACGGGUgCUGCUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.