miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 5' -60.2 NC_006151.1 + 142651 0.68 0.532273
Target:  5'- -cCCACCGaGAGcCGGgCCCAGCUCu- -3'
miRNA:   3'- ucGGUGGUaCUC-GUCgGGGUCGAGca -5'
29507 5' -60.2 NC_006151.1 + 141114 0.68 0.52249
Target:  5'- aGGcCCACCAgcagGAGCAGCCCCccccagaggaAGCccaCGa -3'
miRNA:   3'- -UC-GGUGGUa---CUCGUCGGGG----------UCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 140204 0.67 0.616458
Target:  5'- uGGCCACCGcggGGGCGGUgcugcagaaccugcgCCUgaAGCUCGg -3'
miRNA:   3'- -UCGGUGGUa--CUCGUCG---------------GGG--UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 139931 0.66 0.642871
Target:  5'- cGUCGCCGUGGGCcgccGUCCUcgAGUUCGg -3'
miRNA:   3'- uCGGUGGUACUCGu---CGGGG--UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 139470 0.7 0.420445
Target:  5'- cGCCACCugcacaccGCGGCCCC-GCUCGc -3'
miRNA:   3'- uCGGUGGuacu----CGUCGGGGuCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 137196 0.69 0.493579
Target:  5'- gAGCCGCCAcGAGguGUucaacgCCCGGCUggcCGUg -3'
miRNA:   3'- -UCGGUGGUaCUCguCG------GGGUCGA---GCA- -5'
29507 5' -60.2 NC_006151.1 + 135873 0.68 0.52249
Target:  5'- uGGCCAgCGUccgcGuGCGGCCCguGUUCGUc -3'
miRNA:   3'- -UCGGUgGUA----CuCGUCGGGguCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 135189 0.69 0.503138
Target:  5'- uGCCGCCGccGGGcCAGUCCCAGCgucCGc -3'
miRNA:   3'- uCGGUGGUa-CUC-GUCGGGGUCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 132844 0.68 0.532273
Target:  5'- cGGCCACCAcGGGCGGCC--GGCcCGg -3'
miRNA:   3'- -UCGGUGGUaCUCGUCGGggUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 132597 0.67 0.622551
Target:  5'- gGGCUccGCCccGGGCAcCCCCAGgUCGa -3'
miRNA:   3'- -UCGG--UGGuaCUCGUcGGGGUCgAGCa -5'
29507 5' -60.2 NC_006151.1 + 132109 0.7 0.420445
Target:  5'- aGGCCGgCGcgcacGAGCGGCaggCCCAGCUCGc -3'
miRNA:   3'- -UCGGUgGUa----CUCGUCG---GGGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 130118 0.68 0.572003
Target:  5'- aAGCCcggguucugGCCGUGGGCGcGCgCCAGCagGUa -3'
miRNA:   3'- -UCGG---------UGGUACUCGU-CGgGGUCGagCA- -5'
29507 5' -60.2 NC_006151.1 + 129690 0.68 0.572003
Target:  5'- cGGCCGCCGUGGaccGCGGCgCCgAGCa--- -3'
miRNA:   3'- -UCGGUGGUACU---CGUCG-GGgUCGagca -5'
29507 5' -60.2 NC_006151.1 + 127877 0.66 0.683345
Target:  5'- cGCCGCCGUc--CAcCUCCAGCUCGUc -3'
miRNA:   3'- uCGGUGGUAcucGUcGGGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 123915 0.67 0.612398
Target:  5'- cGGCgGCCGUGAcGCGggccGCCUCGGcCUCGc -3'
miRNA:   3'- -UCGgUGGUACU-CGU----CGGGGUC-GAGCa -5'
29507 5' -60.2 NC_006151.1 + 121982 0.7 0.456225
Target:  5'- gAGCgCACCAUGGGCGGCgCguGC-CGc -3'
miRNA:   3'- -UCG-GUGGUACUCGUCGgGguCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 120202 0.66 0.683345
Target:  5'- -cCCACCAaGGGCAGCgcggagccCCCGGCgcgCGa -3'
miRNA:   3'- ucGGUGGUaCUCGUCG--------GGGUCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 119743 0.67 0.60226
Target:  5'- cGCCGCCGUGGacCGGCUCUGGCggaCGUg -3'
miRNA:   3'- uCGGUGGUACUc-GUCGGGGUCGa--GCA- -5'
29507 5' -60.2 NC_006151.1 + 116421 0.67 0.582055
Target:  5'- gAGCUugUAgcucGGCAGCUUCAGCUUGUc -3'
miRNA:   3'- -UCGGugGUac--UCGUCGGGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 115459 0.74 0.263177
Target:  5'- cGCgGCCAUGAGCu-CCCCgAGCUCGc -3'
miRNA:   3'- uCGgUGGUACUCGucGGGG-UCGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.