Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29507 | 5' | -60.2 | NC_006151.1 | + | 142651 | 0.68 | 0.532273 |
Target: 5'- -cCCACCGaGAGcCGGgCCCAGCUCu- -3' miRNA: 3'- ucGGUGGUaCUC-GUCgGGGUCGAGca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 141114 | 0.68 | 0.52249 |
Target: 5'- aGGcCCACCAgcagGAGCAGCCCCccccagaggaAGCccaCGa -3' miRNA: 3'- -UC-GGUGGUa---CUCGUCGGGG----------UCGa--GCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 140204 | 0.67 | 0.616458 |
Target: 5'- uGGCCACCGcggGGGCGGUgcugcagaaccugcgCCUgaAGCUCGg -3' miRNA: 3'- -UCGGUGGUa--CUCGUCG---------------GGG--UCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 139931 | 0.66 | 0.642871 |
Target: 5'- cGUCGCCGUGGGCcgccGUCCUcgAGUUCGg -3' miRNA: 3'- uCGGUGGUACUCGu---CGGGG--UCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 139470 | 0.7 | 0.420445 |
Target: 5'- cGCCACCugcacaccGCGGCCCC-GCUCGc -3' miRNA: 3'- uCGGUGGuacu----CGUCGGGGuCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 137196 | 0.69 | 0.493579 |
Target: 5'- gAGCCGCCAcGAGguGUucaacgCCCGGCUggcCGUg -3' miRNA: 3'- -UCGGUGGUaCUCguCG------GGGUCGA---GCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 135873 | 0.68 | 0.52249 |
Target: 5'- uGGCCAgCGUccgcGuGCGGCCCguGUUCGUc -3' miRNA: 3'- -UCGGUgGUA----CuCGUCGGGguCGAGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 135189 | 0.69 | 0.503138 |
Target: 5'- uGCCGCCGccGGGcCAGUCCCAGCgucCGc -3' miRNA: 3'- uCGGUGGUa-CUC-GUCGGGGUCGa--GCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 132844 | 0.68 | 0.532273 |
Target: 5'- cGGCCACCAcGGGCGGCC--GGCcCGg -3' miRNA: 3'- -UCGGUGGUaCUCGUCGGggUCGaGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 132597 | 0.67 | 0.622551 |
Target: 5'- gGGCUccGCCccGGGCAcCCCCAGgUCGa -3' miRNA: 3'- -UCGG--UGGuaCUCGUcGGGGUCgAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 132109 | 0.7 | 0.420445 |
Target: 5'- aGGCCGgCGcgcacGAGCGGCaggCCCAGCUCGc -3' miRNA: 3'- -UCGGUgGUa----CUCGUCG---GGGUCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 130118 | 0.68 | 0.572003 |
Target: 5'- aAGCCcggguucugGCCGUGGGCGcGCgCCAGCagGUa -3' miRNA: 3'- -UCGG---------UGGUACUCGU-CGgGGUCGagCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 129690 | 0.68 | 0.572003 |
Target: 5'- cGGCCGCCGUGGaccGCGGCgCCgAGCa--- -3' miRNA: 3'- -UCGGUGGUACU---CGUCG-GGgUCGagca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 127877 | 0.66 | 0.683345 |
Target: 5'- cGCCGCCGUc--CAcCUCCAGCUCGUc -3' miRNA: 3'- uCGGUGGUAcucGUcGGGGUCGAGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 123915 | 0.67 | 0.612398 |
Target: 5'- cGGCgGCCGUGAcGCGggccGCCUCGGcCUCGc -3' miRNA: 3'- -UCGgUGGUACU-CGU----CGGGGUC-GAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 121982 | 0.7 | 0.456225 |
Target: 5'- gAGCgCACCAUGGGCGGCgCguGC-CGc -3' miRNA: 3'- -UCG-GUGGUACUCGUCGgGguCGaGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 120202 | 0.66 | 0.683345 |
Target: 5'- -cCCACCAaGGGCAGCgcggagccCCCGGCgcgCGa -3' miRNA: 3'- ucGGUGGUaCUCGUCG--------GGGUCGa--GCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 119743 | 0.67 | 0.60226 |
Target: 5'- cGCCGCCGUGGacCGGCUCUGGCggaCGUg -3' miRNA: 3'- uCGGUGGUACUc-GUCGGGGUCGa--GCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 116421 | 0.67 | 0.582055 |
Target: 5'- gAGCUugUAgcucGGCAGCUUCAGCUUGUc -3' miRNA: 3'- -UCGGugGUac--UCGUCGGGGUCGAGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 115459 | 0.74 | 0.263177 |
Target: 5'- cGCgGCCAUGAGCu-CCCCgAGCUCGc -3' miRNA: 3'- uCGgUGGUACUCGucGGGG-UCGAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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