Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29513 | 5' | -64.1 | NC_006151.1 | + | 9884 | 1.09 | 0.000554 |
Target: 5'- gGGCGCUUCCUCCCCGGCGGUCCGGGAa -3' miRNA: 3'- -CCGCGAAGGAGGGGCCGCCAGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 40442 | 0.78 | 0.104013 |
Target: 5'- cGGCGCUUgCCUCCCCGGCgccugccuccccGGcCCGGuGGc -3' miRNA: 3'- -CCGCGAA-GGAGGGGCCG------------CCaGGCC-CU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 79306 | 0.78 | 0.100964 |
Target: 5'- cGCGCcccgggacgggCCUCCCCGGCGGgacggCCGGGu -3' miRNA: 3'- cCGCGaa---------GGAGGGGCCGCCa----GGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 4997 | 0.77 | 0.126658 |
Target: 5'- cGGCGCUUCCUgCgCGGgGG-CCGGGc -3' miRNA: 3'- -CCGCGAAGGAgGgGCCgCCaGGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 8365 | 0.76 | 0.132995 |
Target: 5'- aGGCGCgaggCCcccgCCCCcggGGgGGUCCGGGAu -3' miRNA: 3'- -CCGCGaa--GGa---GGGG---CCgCCAGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 38402 | 0.75 | 0.1775 |
Target: 5'- gGGCGCccccuccggCCUCCCCGGC--UCCGGGc -3' miRNA: 3'- -CCGCGaa-------GGAGGGGCCGccAGGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 33207 | 0.74 | 0.204874 |
Target: 5'- cGGCGCccCCggagcacgcggggcgCCCCGGCGGgcgggagggggUCCGGGGg -3' miRNA: 3'- -CCGCGaaGGa--------------GGGGCCGCC-----------AGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 96014 | 0.74 | 0.195059 |
Target: 5'- uGGCGCgcaccgCCUCCUCGGUGGUgCGcGGc -3' miRNA: 3'- -CCGCGaa----GGAGGGGCCGCCAgGC-CCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 92659 | 0.74 | 0.186097 |
Target: 5'- aGGCGCUcgcCCUgCUgCCGGCGG-CCGGGGa -3' miRNA: 3'- -CCGCGAa--GGA-GG-GGCCGCCaGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 30666 | 0.73 | 0.21313 |
Target: 5'- cGCGCUgguuccgggaagCCUcCCCCGGCGGg-CGGGGg -3' miRNA: 3'- cCGCGAa-----------GGA-GGGGCCGCCagGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 50713 | 0.73 | 0.219128 |
Target: 5'- cGGCGaCggCCgCCCCGGCGGUCCa--- -3' miRNA: 3'- -CCGC-GaaGGaGGGGCCGCCAGGcccu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 32360 | 0.72 | 0.25131 |
Target: 5'- cGGgGCUUUCUUCCCGGaccgCCGGGGa -3' miRNA: 3'- -CCgCGAAGGAGGGGCCgccaGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 5349 | 0.71 | 0.28102 |
Target: 5'- gGGCGC--CCUCUCCGGCGcGgcgCCGGcGGg -3' miRNA: 3'- -CCGCGaaGGAGGGGCCGC-Ca--GGCC-CU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 3703 | 0.71 | 0.28102 |
Target: 5'- cGGCGCUUCUUCUugcgccgcuCgGGCgcugGGUCCGGGc -3' miRNA: 3'- -CCGCGAAGGAGG---------GgCCG----CCAGGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 66304 | 0.71 | 0.293663 |
Target: 5'- cGGCGCU-----CCCGGCGGUCCGaGGc -3' miRNA: 3'- -CCGCGAaggagGGGCCGCCAGGC-CCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 130963 | 0.7 | 0.356008 |
Target: 5'- gGGCGCgggggCCgguaCCCCGGCcGcCCGGGc -3' miRNA: 3'- -CCGCGaa---GGa---GGGGCCGcCaGGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 112017 | 0.7 | 0.334235 |
Target: 5'- cGGCgGCgaUUUUCCCGGCGGgagCUGGGGc -3' miRNA: 3'- -CCG-CGaaGGAGGGGCCGCCa--GGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 34456 | 0.7 | 0.333526 |
Target: 5'- cGGCucCUUCCUUCCgGGUccgggcgGGUCCGGGc -3' miRNA: 3'- -CCGc-GAAGGAGGGgCCG-------CCAGGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 130688 | 0.7 | 0.356008 |
Target: 5'- cGGCGCaggaugUCCgggggCCCgacggGGCGGcCCGGGGg -3' miRNA: 3'- -CCGCGa-----AGGa----GGGg----CCGCCaGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 54123 | 0.7 | 0.327197 |
Target: 5'- cGGCgGCUgcggacgggcUCUgCCCCGGCGGcgCCGcGGAg -3' miRNA: 3'- -CCG-CGA----------AGGaGGGGCCGCCa-GGC-CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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