miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 119059 0.68 0.525502
Target:  5'- -cGCG-GC-CGCCuCCGCG-GGCgCGCCc -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCaCCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 58739 0.68 0.525502
Target:  5'- -cGCGUcGCgcaGCgCCGCGgccaccgcGGCCGCCg -3'
miRNA:   3'- aaCGUA-CGag-CGgGGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99526 0.68 0.525502
Target:  5'- cUGCAUgGCgccgCGCCCgcccacggagCACGUGGgCGCg -3'
miRNA:   3'- aACGUA-CGa---GCGGG----------GUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 134311 0.68 0.506331
Target:  5'- aUUGCAcgccGCUgCGCCUCGCGccgGGCauCGCCa -3'
miRNA:   3'- -AACGUa---CGA-GCGGGGUGCa--CCG--GCGG- -5'
29515 3' -61.4 NC_006151.1 + 100100 0.68 0.496858
Target:  5'- -cGCcgGCgcCGCCCuCGC-UGGCgGCCa -3'
miRNA:   3'- aaCGuaCGa-GCGGG-GUGcACCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 112221 0.68 0.496858
Target:  5'- -cGCAgucgcGCUCGCUCguCGccGCCGCCa -3'
miRNA:   3'- aaCGUa----CGAGCGGGguGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117617 0.68 0.496858
Target:  5'- -cGUggGCUCGCgcgcgagcgugCCCACGUGcacGCCGCg -3'
miRNA:   3'- aaCGuaCGAGCG-----------GGGUGCAC---CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 39916 0.68 0.496858
Target:  5'- -cGCGggcUGCUggaGCCCgACGccgaGGCCGCCc -3'
miRNA:   3'- aaCGU---ACGAg--CGGGgUGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 116516 0.68 0.500638
Target:  5'- -aGC-UGUUCuGgCCCGCGUcguagacgcggaacuGGCCGCCg -3'
miRNA:   3'- aaCGuACGAG-CgGGGUGCA---------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 18522 0.68 0.505381
Target:  5'- -aGCAUGCgCGUCCCcgcccGCGUcggcacccggaacGGCCGCg -3'
miRNA:   3'- aaCGUACGaGCGGGG-----UGCA-------------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 97698 0.68 0.506331
Target:  5'- -aGCcgGuCUUGCgUCACGUGGCCcaggaGCCc -3'
miRNA:   3'- aaCGuaC-GAGCGgGGUGCACCGG-----CGG- -5'
29515 3' -61.4 NC_006151.1 + 99631 0.68 0.506331
Target:  5'- -cGCGcGCgagGCCCucaaCACGUGGCuCGCCu -3'
miRNA:   3'- aaCGUaCGag-CGGG----GUGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 97846 0.67 0.563618
Target:  5'- gUGCGcGCgcagCGCgucgUCCGCGUucucggcGGCCGCCa -3'
miRNA:   3'- aACGUaCGa---GCG----GGGUGCA-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135884 0.67 0.554748
Target:  5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3'
miRNA:   3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 115207 0.67 0.554748
Target:  5'- -cGCggGCgcgCGCgCgAuCGUGGCCGCUg -3'
miRNA:   3'- aaCGuaCGa--GCGgGgU-GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58130 0.67 0.554748
Target:  5'- -cGCGUcGCccgCGCCgUACGcGGCCGCg -3'
miRNA:   3'- aaCGUA-CGa--GCGGgGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 133020 0.67 0.554748
Target:  5'- gUGCu--CUCGUCCaggacgGCGuUGGCCGCCu -3'
miRNA:   3'- aACGuacGAGCGGGg-----UGC-ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 70782 0.67 0.554748
Target:  5'- -cGCGcGcCUCcgGCaCCgGCGUGGCCGUCg -3'
miRNA:   3'- aaCGUaC-GAG--CG-GGgUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 97470 0.67 0.554748
Target:  5'- -gGCAggcgGCUCaCCgCCACGUGGaCGCg -3'
miRNA:   3'- aaCGUa---CGAGcGG-GGUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 102279 0.67 0.554748
Target:  5'- cUGCcgGagcgCGgCCCGgccggggacuuUGUGGCCGCCa -3'
miRNA:   3'- aACGuaCga--GCgGGGU-----------GCACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.