miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 119059 0.68 0.525502
Target:  5'- -cGCG-GC-CGCCuCCGCG-GGCgCGCCc -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCaCCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 134311 0.68 0.506331
Target:  5'- aUUGCAcgccGCUgCGCCUCGCGccgGGCauCGCCa -3'
miRNA:   3'- -AACGUa---CGA-GCGGGGUGCa--CCG--GCGG- -5'
29515 3' -61.4 NC_006151.1 + 99631 0.68 0.506331
Target:  5'- -cGCGcGCgagGCCCucaaCACGUGGCuCGCCu -3'
miRNA:   3'- aaCGUaCGag-CGGG----GUGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 97698 0.68 0.506331
Target:  5'- -aGCcgGuCUUGCgUCACGUGGCCcaggaGCCc -3'
miRNA:   3'- aaCGuaC-GAGCGgGGUGCACCGG-----CGG- -5'
29515 3' -61.4 NC_006151.1 + 18522 0.68 0.505381
Target:  5'- -aGCAUGCgCGUCCCcgcccGCGUcggcacccggaacGGCCGCg -3'
miRNA:   3'- aaCGUACGaGCGGGG-----UGCA-------------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 116516 0.68 0.500638
Target:  5'- -aGC-UGUUCuGgCCCGCGUcguagacgcggaacuGGCCGCCg -3'
miRNA:   3'- aaCGuACGAG-CgGGGUGCA---------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69285 0.68 0.496858
Target:  5'- -gGCG-GCgCGCCaCCAgGgacacgGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUgCa-----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 103183 0.68 0.496858
Target:  5'- -cGcCAUGgaCGCcgCCCugGcGGCCGCCc -3'
miRNA:   3'- aaC-GUACgaGCG--GGGugCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 3620 0.68 0.496858
Target:  5'- -gGCcgugGC-CGuCCCCGCGgagGGCCGCg -3'
miRNA:   3'- aaCGua--CGaGC-GGGGUGCa--CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 7174 0.68 0.496858
Target:  5'- -cGCAUGCUCGgcacgcgacccaCCCC-CGUGGUgcuagcgaGCCa -3'
miRNA:   3'- aaCGUACGAGC------------GGGGuGCACCGg-------CGG- -5'
29515 3' -61.4 NC_006151.1 + 107595 0.68 0.496858
Target:  5'- -cGCcaaGCUgGCCCCGcCG-GcGCCGCCg -3'
miRNA:   3'- aaCGua-CGAgCGGGGU-GCaC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 120446 0.68 0.496858
Target:  5'- -cGC-UGUUC-CCCCGCGgcaaGCCGCCc -3'
miRNA:   3'- aaCGuACGAGcGGGGUGCac--CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 37137 0.68 0.496858
Target:  5'- -cGCcccaCUCGCCCgCGcCG-GGCCGCCa -3'
miRNA:   3'- aaCGuac-GAGCGGG-GU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 68122 0.68 0.496858
Target:  5'- -cGCAcgaGCUCGCCgCCgcucccgcggaGCGUggucguggucacGGCCGCCa -3'
miRNA:   3'- aaCGUa--CGAGCGG-GG-----------UGCA------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 100100 0.68 0.496858
Target:  5'- -cGCcgGCgcCGCCCuCGC-UGGCgGCCa -3'
miRNA:   3'- aaCGuaCGa-GCGGG-GUGcACCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 112221 0.68 0.496858
Target:  5'- -cGCAgucgcGCUCGCUCguCGccGCCGCCa -3'
miRNA:   3'- aaCGUa----CGAGCGGGguGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117617 0.68 0.496858
Target:  5'- -cGUggGCUCGCgcgcgagcgugCCCACGUGcacGCCGCg -3'
miRNA:   3'- aaCGuaCGAGCG-----------GGGUGCAC---CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 39916 0.68 0.496858
Target:  5'- -cGCGggcUGCUggaGCCCgACGccgaGGCCGCCc -3'
miRNA:   3'- aaCGU---ACGAg--CGGGgUGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 52368 0.68 0.494032
Target:  5'- -cGCcgGCgCGCCCCcggggcccgcggggGCGgcggGcGCCGCCg -3'
miRNA:   3'- aaCGuaCGaGCGGGG--------------UGCa---C-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 50316 0.68 0.493092
Target:  5'- cUGCAggccaacgagacgGC-CGCCCgGCGccUGGCCGCg -3'
miRNA:   3'- aACGUa------------CGaGCGGGgUGC--ACCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.