miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 58130 0.67 0.554748
Target:  5'- -cGCGUcGCccgCGCCgUACGcGGCCGCg -3'
miRNA:   3'- aaCGUA-CGa--GCGGgGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 115207 0.67 0.554748
Target:  5'- -cGCggGCgcgCGCgCgAuCGUGGCCGCUg -3'
miRNA:   3'- aaCGuaCGa--GCGgGgU-GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135884 0.67 0.554748
Target:  5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3'
miRNA:   3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 81539 0.67 0.553765
Target:  5'- -cGCGgcgGCgCGCUCCGCGgugcacaUGGCCGUg -3'
miRNA:   3'- aaCGUa--CGaGCGGGGUGC-------ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 66054 0.67 0.544941
Target:  5'- gUGCcUGUccagGaCCCCGCGgacGGCCGCCu -3'
miRNA:   3'- aACGuACGag--C-GGGGUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 84475 0.67 0.544941
Target:  5'- -cGCGUgGUUCGCCUU-CGaGGCCGCUg -3'
miRNA:   3'- aaCGUA-CGAGCGGGGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117163 0.67 0.544941
Target:  5'- -cGCuguUGCUCGagaCGCGguagaagGGCCGCCg -3'
miRNA:   3'- aaCGu--ACGAGCgggGUGCa------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 54129 0.67 0.544941
Target:  5'- cUGCGgacggGCUCuGCCCCGgCG-GcGCCGCg -3'
miRNA:   3'- aACGUa----CGAG-CGGGGU-GCaC-CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 133223 0.67 0.544941
Target:  5'- -gGCGUGCgUCGCgCCGCGccagGGCaCGUUg -3'
miRNA:   3'- aaCGUACG-AGCGgGGUGCa---CCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 61817 0.67 0.544941
Target:  5'- -aGCGUGg-UGCUCUACGcggcgucgacggUGGCCGCCc -3'
miRNA:   3'- aaCGUACgaGCGGGGUGC------------ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 72005 0.67 0.54201
Target:  5'- -gGCcguUGCUgaagaccacgucggCGCCCCGCGcGGgCGCCc -3'
miRNA:   3'- aaCGu--ACGA--------------GCGGGGUGCaCCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 112744 0.67 0.535191
Target:  5'- gUGCGccacgGC-CGUCUU-CGUGGCCGCCu -3'
miRNA:   3'- aACGUa----CGaGCGGGGuGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 9470 0.68 0.525502
Target:  5'- -cGCGUccGCUUcgGCCCCcCGcGGCCGCg -3'
miRNA:   3'- aaCGUA--CGAG--CGGGGuGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 11666 0.68 0.525502
Target:  5'- -cGCGuuUGCUacgaucccugCGCCCgACGgGGCCGCg -3'
miRNA:   3'- aaCGU--ACGA----------GCGGGgUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 53088 0.68 0.525502
Target:  5'- -cGCAggUGCUCGUCCgucaGCGggaGGCCGUa -3'
miRNA:   3'- aaCGU--ACGAGCGGGg---UGCa--CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 85748 0.68 0.525502
Target:  5'- -cGCA-GCUCuuCCCCGgGcUGGCCGCg -3'
miRNA:   3'- aaCGUaCGAGc-GGGGUgC-ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 58739 0.68 0.525502
Target:  5'- -cGCGUcGCgcaGCgCCGCGgccaccgcGGCCGCCg -3'
miRNA:   3'- aaCGUA-CGag-CGgGGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 87290 0.68 0.525502
Target:  5'- cUGCAcGCgcCGCCCCccucgccCGUGGCgcaCGCCg -3'
miRNA:   3'- aACGUaCGa-GCGGGGu------GCACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 95677 0.68 0.525502
Target:  5'- -gGCGcGCUCGCCguCCAgGUG-CCGCUg -3'
miRNA:   3'- aaCGUaCGAGCGG--GGUgCACcGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99526 0.68 0.525502
Target:  5'- cUGCAUgGCgccgCGCCCgcccacggagCACGUGGgCGCg -3'
miRNA:   3'- aACGUA-CGa---GCGGG----------GUGCACCgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.