miRNA display CGI


Results 61 - 80 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 100546 0.73 0.2435
Target:  5'- cUGCAgacgagcGC-CGCCCuCACGgccGGCCGCCu -3'
miRNA:   3'- aACGUa------CGaGCGGG-GUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 87493 0.73 0.2435
Target:  5'- -cGCG-GC-CGCCCC-CGUucaGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGGGGuGCA---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 70924 0.73 0.245814
Target:  5'- -cGCGUGCUggcgcugcacgacggCGCCUucucggcggugCGCGUGGCCGUCg -3'
miRNA:   3'- aaCGUACGA---------------GCGGG-----------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6772 0.73 0.249319
Target:  5'- uUUGCAUGCcCGgCCCAagaugGcGGCCGCCg -3'
miRNA:   3'- -AACGUACGaGCgGGGUg----CaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64423 0.73 0.255253
Target:  5'- -cGCucucGCUCuGCgCgCGCGUGGCCGCCu -3'
miRNA:   3'- aaCGua--CGAG-CGgG-GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 139923 0.73 0.255253
Target:  5'- -cGCggGCUCGUCgC-CGUgGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGgGuGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6843 0.73 0.261302
Target:  5'- uUUGCAUGCcCgGCCCC-CGcGGCgGCCa -3'
miRNA:   3'- -AACGUACGaG-CGGGGuGCaCCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 38252 0.73 0.267467
Target:  5'- -cGCG-GCccucuUCGCCCCggccaACGUGGCCGCg -3'
miRNA:   3'- aaCGUaCG-----AGCGGGG-----UGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 109728 0.73 0.273749
Target:  5'- -cGCugcGCUCGCCgCUGgagcggaugcCGUGGCCGCCg -3'
miRNA:   3'- aaCGua-CGAGCGG-GGU----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 44013 0.71 0.335639
Target:  5'- -cGCA-GCcccCGCCCCGCGgggagccGGCCGUCg -3'
miRNA:   3'- aaCGUaCGa--GCGGGGUGCa------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 83424 0.71 0.321048
Target:  5'- gUUGCcgccgggggGCUC-CCCgggcaGCGUGGCCGCCa -3'
miRNA:   3'- -AACGua-------CGAGcGGGg----UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 140185 0.71 0.321048
Target:  5'- -cGCAcGCUgGaCCCCAuCGUGGCCaCCg -3'
miRNA:   3'- aaCGUaCGAgC-GGGGU-GCACCGGcGG- -5'
29515 3' -61.4 NC_006151.1 + 127517 0.71 0.325375
Target:  5'- -cGCAUGCUCccguggcgcgucaGCggggCCCAgggggcgucgucguCGUGGCCGCCg -3'
miRNA:   3'- aaCGUACGAG-------------CG----GGGU--------------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 9041 0.71 0.3261
Target:  5'- -cGCcgGggCGCCCCGCGUgcuccgggggcgccGGCCgGCCa -3'
miRNA:   3'- aaCGuaCgaGCGGGGUGCA--------------CCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 136851 0.71 0.335639
Target:  5'- -cGCcgGCcucgCGCgCCGCGUGaCCGCCg -3'
miRNA:   3'- aaCGuaCGa---GCGgGGUGCACcGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 128194 0.71 0.344624
Target:  5'- -aGCGUGCcgcgcuccauggCGCCCCAggcgugcgacgagcuCGUGGgCGCCa -3'
miRNA:   3'- aaCGUACGa-----------GCGGGGU---------------GCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69191 0.71 0.357646
Target:  5'- -cGCGccagggGCUCGCuccggggCCCGCGccGGCCGCCc -3'
miRNA:   3'- aaCGUa-----CGAGCG-------GGGUGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 59422 0.71 0.350709
Target:  5'- -aGCAgcgGCgccaGCUCgGCGUcGGCCGCCg -3'
miRNA:   3'- aaCGUa--CGag--CGGGgUGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 38208 0.71 0.320331
Target:  5'- -aGCGUggacgggGCcCGCgCCCGCGaGGCCGCCu -3'
miRNA:   3'- aaCGUA-------CGaGCG-GGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 101910 0.71 0.343115
Target:  5'- -aGCAUGCcCaagcggcgccgGCCCC-CGUGGCCGgCg -3'
miRNA:   3'- aaCGUACGaG-----------CGGGGuGCACCGGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.